Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynNOUM97013_RS02265 Genome accession   NZ_CP047941
Coordinates   451217..452356 (+) Length   379 a.a.
NCBI ID   WP_186480603.1    Uniprot ID   A0A7G8ETB7
Organism   Synechococcus sp. NOUM97013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 446217..457356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynNOUM97013_RS02240 (SynNOUM97013_00466) - 446848..447309 (+) 462 WP_186480599.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynNOUM97013_RS02245 (SynNOUM97013_00467) - 447321..448385 (+) 1065 WP_186480600.1 LdpA C-terminal domain-containing domain -
  SynNOUM97013_RS02250 (SynNOUM97013_00468) - 448424..450106 (+) 1683 WP_186480601.1 AAA family ATPase -
  SynNOUM97013_RS02260 (SynNOUM97013_00470) - 450300..451064 (+) 765 WP_186480602.1 HAD family hydrolase -
  SynNOUM97013_RS02265 (SynNOUM97013_00471) recA 451217..452356 (+) 1140 WP_186480603.1 recombinase RecA Machinery gene
  SynNOUM97013_RS02270 (SynNOUM97013_00472) - 452357..452707 (-) 351 WP_186480604.1 DUF1815 family protein -
  SynNOUM97013_RS02275 (SynNOUM97013_00473) - 452782..453021 (-) 240 WP_186480605.1 DUF2839 domain-containing protein -
  SynNOUM97013_RS02280 (SynNOUM97013_00474) - 453061..454503 (-) 1443 WP_186481368.1 helicase -
  SynNOUM97013_RS02285 (SynNOUM97013_00475) - 454605..455507 (+) 903 WP_186480606.1 prephenate/arogenate dehydrogenase -
  SynNOUM97013_RS02290 (SynNOUM97013_00476) crtD 455491..457005 (-) 1515 WP_186480607.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40074.66 Da        Isoelectric Point: 7.8288

>NTDB_id=418597 SynNOUM97013_RS02265 WP_186480603.1 451217..452356(+) (recA) [Synechococcus sp. NOUM97013]
MPADVKASQSSGGDVRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNPEAKEAIEVLVRQKLTEGSEVTSNSMRPLAAAARSAASKTAGKSEAAASAKGAA

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=418597 SynNOUM97013_RS02265 WP_186480603.1 451217..452356(+) (recA) [Synechococcus sp. NOUM97013]
ATGCCAGCCGACGTGAAAGCCTCCCAGTCCTCCGGCGGAGATGTCCGCCCAGGTGAGCGCGATAAAGCGCTCAACCTCGT
GCTCGGTCAGATCGAGCGCAACTTCGGCAAGGGCTCAATCATGCGCCTTGGAGATGCCTCCAGGATGCGGGTTGAAACAA
TCTCCACCGGTGCTCTCACCCTCGATCTTGCCTTGGGTGGCGGGTATCCCAAGGGGCGTGTGGTCGAGGTCTATGGCCCA
GAGAGCTCCGGTAAAACGACGCTCACCCTCCATGCCATCGCTGAGGTGCAGCGCAGGGGCGGTGTTGCGGCCTTCGTCGA
CGCCGAGCATGCGCTCGATCCGGTGTATGCAGCGTCGCTTGGCGTTGATATCGAAAATCTGCTGGTCTCGCAGCCTGACA
CTGGCGAGATGGCCCTGGAGATCGTCGACCAGCTTGTGCGTTCTGCTGCCGTCGACATCGTGGTGGTCGACTCGGTTGCG
GCGCTCACGCCCCGGGCCGAGATTGAAGGAGAAATGGGTGATCTGGCGGTGGGCAGTCAGGCCCGCTTGATGAGCCAGGC
GATGCGCAAGATCACCGGCAACATCGGTAAATCCGGTTGCACCGTGATCTTCCTCAACCAGTTGCGCCTGAAGATTGGCG
TGACCTATGGCAACCCTGAAACCACCACCGGTGGTAACGCGCTCAAGTTCTACGCCTCGGTGCGTCTTGATATTCGTCGC
ATTCAGACGCTCAAGCGAGGAACCGAGGAGTACGGCATCCGGGCCAAGGTCAAAGTGGCCAAAAACAAGGTTGCCCCTCC
GTTCCGCATCGCAGAGTTCGACATTCTCTTTGGGCGGGGGATCAGCACGCTCGGCTGTCTGCTCGACCTCGCTGAAGAAA
CCGGTGTCGTCACCCGTAAAGGTGCCTGGTACAGCTACGAGGGCGACAACATCGGGCAGGGTCGTGACAACACGATCGGC
TGGCTGGAGCAGAACCCTGAGGCCAAGGAGGCCATTGAAGTGCTGGTGCGTCAGAAGCTGACGGAAGGATCGGAAGTCAC
CTCCAATTCCATGCGACCTCTCGCTGCAGCTGCGCGCTCCGCAGCTTCAAAGACTGCCGGCAAGTCAGAAGCGGCTGCGT
CAGCGAAGGGTGCCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8ETB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.955

87.335

0.567
  recA Pseudomonas stutzeri DSM 10701

64.596

84.96

0.549
  recA Acinetobacter baumannii D1279779

64.596

84.96

0.549
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

84.96

0.533
  recA Vibrio cholerae strain A1552

62.733

84.96

0.533
  recA Glaesserella parasuis strain SC1401

61.468

86.28

0.53
  recA Ralstonia pseudosolanacearum GMI1000

64.63

82.058

0.53
  recA Neisseria gonorrhoeae strain FA1090

60.241

87.599

0.528
  recA Neisseria gonorrhoeae MS11

60.241

87.599

0.528
  recA Neisseria gonorrhoeae MS11

60.241

87.599

0.528
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

84.697

0.522
  recA Helicobacter pylori 26695

57.988

89.182

0.517
  recA Helicobacter pylori strain NCTC11637

57.988

89.182

0.517
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

86.807

0.515
  recA Streptococcus pneumoniae Rx1

56.805

89.182

0.507
  recA Streptococcus pneumoniae D39

56.805

89.182

0.507
  recA Streptococcus pneumoniae R6

56.805

89.182

0.507
  recA Streptococcus pneumoniae TIGR4

56.805

89.182

0.507
  recA Streptococcus mitis SK321

55.814

90.765

0.507
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.813

84.697

0.507
  recA Streptococcus mitis NCTC 12261

56.509

89.182

0.504
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

84.433

0.501
  recA Lactococcus lactis subsp. cremoris KW2

56.418

88.391

0.499
  recA Streptococcus mutans UA159

57.846

85.752

0.496
  recA Streptococcus pyogenes NZ131

55.963

86.28

0.483
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.595

83.377

0.48

Multiple sequence alignment