Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E3T05_RS13110 Genome accession   NZ_CP047820
Coordinates   2655724..2656119 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1395     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2650724..2661119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T05_RS13080 - 2651982..2652386 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  E3T05_RS13085 - 2652724..2652816 (+) 93 WP_001790611.1 hypothetical protein -
  E3T05_RS13090 - 2652948..2653181 (+) 234 WP_000384523.1 DUF1146 family protein -
  E3T05_RS13095 murA 2653292..2654557 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E3T05_RS13100 fabZ 2654591..2655031 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E3T05_RS13105 - 2655090..2655530 (-) 441 WP_000846746.1 YwpF-like family protein -
  E3T05_RS13110 ssb 2655724..2656119 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  E3T05_RS13115 sceD 2656508..2657203 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  E3T05_RS13120 tenA 2657589..2658278 (+) 690 WP_000396077.1 thiaminase II -
  E3T05_RS13125 thiD 2658271..2659101 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E3T05_RS13130 thiM 2659085..2659876 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  E3T05_RS13135 thiE 2659878..2660519 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=417241 E3T05_RS13110 WP_000932694.1 2655724..2656119(+) (ssb) [Staphylococcus aureus strain UP_1395]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=417241 E3T05_RS13110 WP_000932694.1 2655724..2656119(+) (ssb) [Staphylococcus aureus strain UP_1395]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment