Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S60_RS13935 | Genome accession | NZ_CP047804 |
| Coordinates | 2818074..2818544 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain UP_774 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2793709..2823590 | 2818074..2818544 | within | 0 |
Gene organization within MGE regions
Location: 2793709..2823590
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S60_RS13775 (E3S60_13775) | - | 2793709..2794335 (-) | 627 | WP_000522381.1 | nitroreductase family protein | - |
| E3S60_RS13780 (E3S60_13780) | - | 2794532..2795791 (+) | 1260 | WP_000120297.1 | SdrH family protein | - |
| E3S60_RS13785 (E3S60_13785) | mroQ | 2795816..2796559 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| E3S60_RS13790 (E3S60_13790) | groES | 2796734..2797018 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| E3S60_RS13795 (E3S60_13795) | groL | 2797094..2798710 (+) | 1617 | WP_000240655.1 | chaperonin GroEL | - |
| E3S60_RS13800 (E3S60_13800) | - | 2799250..2800557 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| E3S60_RS13805 (E3S60_13805) | - | 2801001..2802224 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| E3S60_RS13810 (E3S60_13810) | lukH | 2802660..2803715 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| E3S60_RS13815 (E3S60_13815) | lukG | 2803737..2804753 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| E3S60_RS13820 (E3S60_13820) | sph | 2804991..2805815 (-) | 825 | Protein_2678 | sphingomyelin phosphodiesterase | - |
| E3S60_RS13825 (E3S60_13825) | - | 2805872..2806909 (-) | 1038 | WP_000857180.1 | tyrosine-type recombinase/integrase | - |
| E3S60_RS13830 (E3S60_13830) | - | 2806972..2807214 (-) | 243 | WP_000427213.1 | hypothetical protein | - |
| E3S60_RS13835 (E3S60_13835) | - | 2807225..2808208 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| E3S60_RS13840 (E3S60_13840) | - | 2808308..2808490 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| E3S60_RS13845 (E3S60_13845) | - | 2808694..2809035 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3S60_RS13850 (E3S60_13850) | - | 2809041..2809973 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3S60_RS13855 (E3S60_13855) | - | 2809989..2810702 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3S60_RS13860 (E3S60_13860) | - | 2810665..2810839 (+) | 175 | Protein_2686 | transcriptional regulator | - |
| E3S60_RS13865 (E3S60_13865) | - | 2810836..2811099 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| E3S60_RS13870 (E3S60_13870) | - | 2811115..2811330 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3S60_RS13875 (E3S60_13875) | - | 2811319..2811648 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| E3S60_RS13880 (E3S60_13880) | - | 2811699..2812451 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S60_RS13885 (E3S60_13885) | - | 2812467..2812664 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| E3S60_RS13890 (E3S60_13890) | - | 2812651..2813031 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| E3S60_RS13895 (E3S60_13895) | - | 2813086..2813409 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3S60_RS13900 (E3S60_13900) | - | 2813406..2813567 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3S60_RS13905 (E3S60_13905) | - | 2813662..2813964 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3S60_RS13910 (E3S60_13910) | - | 2813969..2814229 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3S60_RS13915 (E3S60_13915) | - | 2814238..2814501 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S60_RS13920 (E3S60_13920) | - | 2814510..2816453 (+) | 1944 | WP_160195539.1 | AAA family ATPase | - |
| E3S60_RS13925 (E3S60_13925) | - | 2816455..2817375 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| E3S60_RS13930 (E3S60_13930) | - | 2817456..2818073 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| E3S60_RS13935 (E3S60_13935) | ssbA | 2818074..2818544 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S60_RS13940 (E3S60_13940) | - | 2818574..2819467 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| E3S60_RS13945 (E3S60_13945) | - | 2819474..2819692 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3S60_RS13950 (E3S60_13950) | - | 2819701..2820105 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S60_RS13955 (E3S60_13955) | - | 2820118..2820489 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S60_RS13960 (E3S60_13960) | - | 2820489..2820746 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| E3S60_RS13965 (E3S60_13965) | - | 2820749..2820991 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| E3S60_RS13970 (E3S60_13970) | - | 2821006..2821251 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| E3S60_RS13975 (E3S60_13975) | - | 2821248..2821784 (+) | 537 | WP_000185693.1 | dUTPase | - |
| E3S60_RS13980 (E3S60_13980) | - | 2821821..2822066 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| E3S60_RS13985 (E3S60_13985) | - | 2822063..2822269 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| E3S60_RS13990 (E3S60_13990) | rinB | 2822266..2822415 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3S60_RS13995 (E3S60_13995) | - | 2822415..2822615 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| E3S60_RS14000 (E3S60_14000) | - | 2822643..2823059 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3S60_RS14005 (E3S60_14005) | - | 2823291..2823590 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=416909 E3S60_RS13935 WP_000934759.1 2818074..2818544(+) (ssbA) [Staphylococcus aureus strain UP_774]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=416909 E3S60_RS13935 WP_000934759.1 2818074..2818544(+) (ssbA) [Staphylococcus aureus strain UP_774]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |