Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GVI48_RS02070 Genome accession   NZ_CP047697
Coordinates   443836..444243 (+) Length   135 a.a.
NCBI ID   WP_003084583.1    Uniprot ID   A0A0H2ZL28
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 438836..449243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS02040 - 438885..439889 (-) 1005 WP_003084569.1 aspartate carbamoyltransferase catalytic subunit -
  GVI48_RS02045 pyrR 439913..440425 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GVI48_RS02050 ruvX 440537..440971 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  GVI48_RS02055 - 440971..441540 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  GVI48_RS02060 - 441589..442482 (-) 894 WP_003160914.1 energy transducer TonB -
  GVI48_RS02065 gshB 442629..443582 (-) 954 WP_003100943.1 glutathione synthase -
  GVI48_RS02070 pilG 443836..444243 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  GVI48_RS02075 pilH 444290..444655 (+) 366 WP_003084587.1 twitching motility response regulator PilH -
  GVI48_RS02080 - 444706..445242 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  GVI48_RS02085 pilJ 445327..447375 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  GVI48_RS02090 pilK 447436..448311 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14718.11 Da        Isoelectric Point: 7.1340

>NTDB_id=415411 GVI48_RS02070 WP_003084583.1 443836..444243(+) (pilG) [Pseudomonas aeruginosa strain RD1-3]
MEQQSDGLKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKAHVPSFTPVDAVS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=415411 GVI48_RS02070 WP_003084583.1 443836..444243(+) (pilG) [Pseudomonas aeruginosa strain RD1-3]
ATGGAACAGCAATCCGACGGTTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGTCGCACCGCCGAAACACTGCT
GAAAAAGGTCGGTTGCGACGTGATCACGGCAATCGACGGCTTCGATGCCCTGGCGAAGATCGCCGATACCCATCCGAACA
TCATTTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAACAACAGCGCGTTCAAG
TCCACTCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCTCCGACCAGTA
CCTCACCAAGCCGTTCAGCAAGGAAGAGCTGCTGGGCGCGATCAAGGCACACGTACCCAGCTTCACCCCGGTGGACGCCG
TTTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZL28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.803

94.074

0.704
  vicR Streptococcus mutans UA159

44.444

86.667

0.385

Multiple sequence alignment