Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   I6A80_RS20030 Genome accession   NZ_CP060241
Coordinates   4368251..4368580 (-) Length   109 a.a.
NCBI ID   WP_023115163.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain C-I-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4363251..4373580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6A80_RS20015 (I6A80_004107) uvrB 4364638..4366650 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  I6A80_RS20020 (I6A80_004108) - 4366838..4368034 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  I6A80_RS20030 (I6A80_004110) comEA/comE1 4368251..4368580 (-) 330 WP_023115163.1 ComEA family DNA-binding protein Machinery gene
  I6A80_RS20035 (I6A80_004111) - 4368771..4370768 (-) 1998 WP_031633096.1 polysaccharide biosynthesis protein -
  I6A80_RS20040 (I6A80_004112) - 4370863..4371891 (-) 1029 WP_003116434.1 MraY family glycosyltransferase -
  I6A80_RS20045 (I6A80_004113) - 4372084..4373289 (-) 1206 WP_023102972.1 DegT/DnrJ/EryC1/StrS family aminotransferase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11293.27 Da        Isoelectric Point: 9.1462

>NTDB_id=413826 I6A80_RS20030 WP_023115163.1 4368251..4368580(-) (comEA/comE1) [Pseudomonas aeruginosa strain C-I-1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDAAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=413826 I6A80_RS20030 WP_023115163.1 4368251..4368580(-) (comEA/comE1) [Pseudomonas aeruginosa strain C-I-1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
CGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.346

95.413

0.394

Multiple sequence alignment