Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GSF72_RS13210 | Genome accession | NZ_CP047321 |
| Coordinates | 2555668..2556171 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain RJ1267 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2535105..2560234 | 2555668..2556171 | within | 0 |
Gene organization within MGE regions
Location: 2535105..2560234
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSF72_RS13045 (GSF72_13045) | - | 2535105..2535356 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| GSF72_RS13050 (GSF72_13050) | - | 2535656..2535919 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| GSF72_RS13055 (GSF72_13055) | - | 2536057..2536629 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| GSF72_RS13060 (GSF72_13060) | - | 2536810..2537178 (-) | 369 | WP_000849177.1 | YxeA family protein | - |
| GSF72_RS13065 (GSF72_13065) | selX | 2537547..2538158 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| GSF72_RS14865 | - | 2538364..2539065 (+) | 702 | Protein_2515 | tyrosine-type recombinase/integrase | - |
| GSF72_RS13080 (GSF72_13080) | - | 2539104..2540042 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| GSF72_RS13085 (GSF72_13085) | - | 2540582..2541025 (-) | 444 | WP_000022885.1 | GNAT family N-acetyltransferase | - |
| GSF72_RS13090 (GSF72_13090) | - | 2541144..2541470 (-) | 327 | WP_000679756.1 | DUF1433 domain-containing protein | - |
| GSF72_RS13095 (GSF72_13095) | - | 2541563..2542774 (+) | 1212 | WP_009558370.1 | hypothetical protein | - |
| GSF72_RS13100 (GSF72_13100) | - | 2542776..2543165 (+) | 390 | WP_000362902.1 | hypothetical protein | - |
| GSF72_RS13105 (GSF72_13105) | - | 2543282..2543641 (+) | 360 | WP_000935290.1 | hypothetical protein | - |
| GSF72_RS13110 (GSF72_13110) | - | 2543716..2544285 (-) | 570 | WP_159343919.1 | terminase small subunit | - |
| GSF72_RS13115 (GSF72_13115) | - | 2544282..2544494 (-) | 213 | WP_078065371.1 | pathogenicity island family protein | - |
| GSF72_RS13120 (GSF72_13120) | - | 2544626..2545153 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| GSF72_RS13125 (GSF72_13125) | - | 2545204..2545422 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| GSF72_RS13130 (GSF72_13130) | - | 2545440..2546018 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| GSF72_RS13135 (GSF72_13135) | - | 2546030..2546371 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| GSF72_RS13140 (GSF72_13140) | - | 2546718..2547359 (-) | 642 | WP_048665662.1 | pathogenicity island protein | - |
| GSF72_RS13145 (GSF72_13145) | - | 2547361..2547633 (-) | 273 | WP_001149389.1 | hypothetical protein | - |
| GSF72_RS13150 (GSF72_13150) | - | 2547620..2548423 (-) | 804 | WP_159343920.1 | bifunctional DNA primase/polymerase | - |
| GSF72_RS13155 (GSF72_13155) | - | 2548599..2550215 (-) | 1617 | WP_048665658.1 | hypothetical protein | - |
| GSF72_RS13160 (GSF72_13160) | tscT | 2550290..2550589 (-) | 300 | WP_048665656.1 | type II toxin-antitoxin system toxin TscT | - |
| GSF72_RS13165 (GSF72_13165) | - | 2550590..2550973 (-) | 384 | WP_000403843.1 | hypothetical protein | - |
| GSF72_RS13170 (GSF72_13170) | - | 2550933..2551178 (-) | 246 | WP_001171847.1 | hypothetical protein | - |
| GSF72_RS13175 (GSF72_13175) | - | 2551163..2551318 (-) | 156 | WP_000784886.1 | hypothetical protein | - |
| GSF72_RS13180 (GSF72_13180) | - | 2551330..2551602 (-) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| GSF72_RS13185 (GSF72_13185) | - | 2551603..2551815 (-) | 213 | WP_048665654.1 | helix-turn-helix domain-containing protein | - |
| GSF72_RS13190 (GSF72_13190) | - | 2551959..2552657 (+) | 699 | WP_048665652.1 | helix-turn-helix domain-containing protein | - |
| GSF72_RS13195 (GSF72_13195) | - | 2553110..2554324 (+) | 1215 | WP_048665650.1 | tyrosine-type recombinase/integrase | - |
| GSF72_RS13200 (GSF72_13200) | - | 2554360..2554986 (+) | 627 | WP_233231932.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| GSF72_RS13205 (GSF72_13205) | rpsR | 2555374..2555616 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| GSF72_RS13210 (GSF72_13210) | ssbA | 2555668..2556171 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| GSF72_RS13215 (GSF72_13215) | rpsF | 2556192..2556488 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| GSF72_RS13220 (GSF72_13220) | - | 2556732..2556923 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| GSF72_RS13225 (GSF72_13225) | ychF | 2557009..2558106 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| GSF72_RS13230 (GSF72_13230) | - | 2558118..2558321 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| GSF72_RS13235 (GSF72_13235) | - | 2558351..2559232 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| GSF72_RS13240 (GSF72_13240) | - | 2559389..2560234 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=412651 GSF72_RS13210 WP_000934799.1 2555668..2556171(-) (ssbA) [Staphylococcus aureus strain RJ1267]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=412651 GSF72_RS13210 WP_000934799.1 2555668..2556171(-) (ssbA) [Staphylococcus aureus strain RJ1267]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |