Detailed information NTG0412386

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GTF71_RS11270
• Genome accession: NZ_CP047299
• Coordinates: 2514004..2515011 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae O1 biovar El Tor strain P27459
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2509004..2520011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTF71_RS11260 (GTF71_11265)	cysM	2510168..2511055 (+)	888	WP_001279365.1	cysteine synthase CysM	-
GTF71_RS11265 (GTF71_11270)	mutS	2511323..2513911 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
GTF71_RS11270 (GTF71_11275)	rpoS	2514004..2515011 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
GTF71_RS11275 (GTF71_11280)	nlpD	2515085..2516020 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
GTF71_RS11280 (GTF71_11285)	-	2516020..2516646 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GTF71_RS11285 (GTF71_11290)	surE	2516639..2517391 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
GTF71_RS11290 (GTF71_11295)	truD	2517393..2518478 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
GTF71_RS11295 (GTF71_11300)	ispF	2518508..2518984 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GTF71_RS11300 (GTF71_11305)	ispD	2518981..2519679 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GTF71_RS11305 (GTF71_11310)	ftsB	2519676..2519960 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=412386 GTF71_RS11270 WP_000116737.1 2514004..2515011(-) (rpoS) [Vibrio cholerae O1 biovar El Tor strain P27459]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=412386 GTF71_RS11270 WP_000116737.1 2514004..2515011(-) (rpoS) [Vibrio cholerae O1 biovar El Tor strain P27459]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1