Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   H5J27_RS10095 Genome accession   NZ_CP059995
Coordinates   2159111..2161855 (+) Length   914 a.a.
NCBI ID   WP_033998478.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY3045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2154111..2166855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5J27_RS10075 (H5J27_10075) - 2154746..2155507 (+) 762 WP_003155356.1 class I SAM-dependent methyltransferase -
  H5J27_RS10080 (H5J27_10080) leuB 2155566..2156648 (+) 1083 WP_033977032.1 3-isopropylmalate dehydrogenase -
  H5J27_RS10085 (H5J27_10085) asd 2156718..2157830 (+) 1113 WP_012075055.1 aspartate-semialdehyde dehydrogenase -
  H5J27_RS10090 (H5J27_10090) - 2157932..2158942 (+) 1011 WP_033977034.1 aspartate-semialdehyde dehydrogenase -
  H5J27_RS10095 (H5J27_10095) fimV 2159111..2161855 (+) 2745 WP_033998478.1 motility hub landmark protein FimV Machinery gene
  H5J27_RS10100 (H5J27_10100) truA 2161877..2162734 (+) 858 WP_003157954.1 tRNA pseudouridine(38-40) synthase TruA -
  H5J27_RS10105 (H5J27_10105) - 2162824..2163459 (+) 636 WP_003157955.1 phosphoribosylanthranilate isomerase -
  H5J27_RS10110 (H5J27_10110) accD 2163728..2164600 (+) 873 WP_003157956.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  H5J27_RS10115 (H5J27_10115) folC 2164597..2165886 (+) 1290 WP_012075060.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  H5J27_RS10120 (H5J27_10120) - 2165890..2166549 (+) 660 WP_033977038.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 914 a.a.        Molecular weight: 95905.93 Da        Isoelectric Point: 3.9327

>NTDB_id=412186 H5J27_RS10095 WP_033998478.1 2159111..2161855(+) (fimV) [Pseudomonas aeruginosa strain NY3045]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLSSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRASRAPRASQ
AQAPAPVRTTAPAGSETYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLER
SPREALSQVQAQNQSWRGSRNPAAASAGARQLDATQRSAAGSAPAKVDAPDNLRLVSGEGKASKGADKGGKGDSKAIADT
LAVTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLAAEGQGVAQPGAAQVDAGAAAQAPAAAAPS
PAPAGEAPAAPAQPPVAPPPAPAAETPPAPAAPAPVQTEEPAEASFLDELLANPLWLAVIGGSALLALLVLLMILSRRNA
QKEKDEAAALAAEAGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAASAEKTTAQTSDALGEADIYIAYGRFNQAAELLQN
AIYDEPQRSDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELDSFSLD
DLSLDHTGHAAGPDAAGQDLDDAFDLSLDDLDGDLGGDEVQADLKSDSGALDDLTLDSDLDLAASAPAEKPADDLDFGLD
FADLAETPVDAKGDGLGDFSLDLDAPEDKLSDDDFLLSLNDDAAAAAPADNGFGLDTEAADEPSLSLPDDFDLSLADEPA
EPAVPAKSEDSFAAQLDEVSAQLDELASNLDEPKNAAPSFSAEDAAIASTLDGESDDDFDFLSGADEAATKLDLARAYID
MGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2745 bp        

>NTDB_id=412186 H5J27_RS10095 WP_033998478.1 2159111..2161855(+) (fimV) [Pseudomonas aeruginosa strain NY3045]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCACGGGTTGGGACT
CGGCGAAATAACCCTGAAGTCGGCGTTGAACCAGCCGCTGGATGCCGAGATCGAGCTGCTCGAAGTCCGCGACCTGAGTT
CGGGCGAGGTGATACCGAGCCTGGCGTCGCCGGAGGAATTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTTACCGAC
CTGAAGTTCACCCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATCCGCGTGACCTCGTCGAAGCCGGTGCAGGAACCCTA
CCTGAACTTCCTCGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAATACACCGTCCTGCTGGATCCGCCGCTGT
ACTCGCCGCAGGCCGCGGCGAGCGCCCCGCAGGCACCGGTCAGCGCGCCGCGGGCGAGCAGAGCTCCACGTGCCTCGCAG
GCACAGGCGCCGGCCCCGGTGCGGACCACCGCGCCGGCCGGCAGCGAGACCTATCGCACCGTGTCCAACGACACGCTGTG
GGAGATCGCCCAGCGCAACCGTACCGACCGGGTTTCCGTGCCGCAGGCGATGCTCGCCTTCCAGGAACTGAATCCGGGCG
CCTTCGTCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATCCCCACCGAACAACAGATGCTGGAGCGC
TCCCCGCGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCAGCGGCCAGCGC
CGGCGCCCGGCAATTGGACGCGACCCAGCGTAGCGCCGCCGGTTCGGCGCCGGCCAAGGTCGACGCCCCGGACAACCTGC
GCCTGGTTTCCGGCGAAGGCAAGGCCAGCAAGGGGGCCGACAAGGGCGGCAAGGGTGACAGCAAGGCGATCGCCGACACC
CTGGCGGTGACCAAGGAAAGCCTGGACAGCACCCGTCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGACCTGCAGAG
CCAGCTGGACAAGCTGCAGAAGCTGATCCAGCTGAAAGACGCGCAGTTGGCCAAGCTGCAGGGGCAATTGGCTGCCGAAG
GCCAGGGCGTAGCCCAGCCGGGCGCGGCCCAGGTGGATGCCGGCGCCGCTGCGCAAGCTCCCGCCGCCGCAGCGCCGTCC
CCGGCTCCCGCCGGCGAGGCGCCAGCCGCTCCGGCGCAGCCTCCGGTAGCGCCGCCGCCCGCGCCAGCGGCCGAGACCCC
GCCGGCGCCAGCCGCACCGGCCCCGGTACAGACGGAAGAACCGGCGGAAGCGAGTTTCCTCGACGAGTTGCTGGCCAATC
CGCTGTGGCTGGCGGTGATCGGCGGTAGCGCGCTGCTGGCCTTGCTGGTCCTGCTGATGATTCTGTCCCGGCGCAATGCG
CAGAAGGAGAAGGACGAGGCTGCGGCCCTGGCGGCGGAAGCCGGCGAGGAACAGGAGGATGCGCTGGACCTGGGAAAGGA
CGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCGGCCGTTGCGGCGTCGGCCGAGAAGACCACCGCGC
AGACTTCCGATGCGCTGGGCGAGGCCGATATCTACATCGCCTACGGACGCTTCAACCAGGCCGCCGAACTGCTGCAGAAC
GCCATTTATGACGAGCCGCAGCGCAGCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGATCGCGAAGG
CTTCGCCCGCCAGGAAAACGAACTGCGCGAGATCGGTGGCGCCCAGCCGCAGGTCGAGCAGCTCAAGTCGCGCTACCCGG
CGATGGTGGCGGTGGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAGGACGAACTGGACAGCTTCAGCCTCGAC
GACCTGTCGCTGGACCACACCGGTCATGCGGCCGGGCCGGACGCGGCCGGGCAGGACCTCGACGACGCCTTCGACCTGAG
CCTGGATGACCTCGATGGCGATCTCGGCGGTGACGAGGTGCAGGCCGACCTCAAGTCCGATAGCGGTGCGCTGGACGACC
TGACCCTGGACAGCGATCTCGACCTGGCCGCCTCGGCGCCGGCGGAGAAGCCGGCCGATGACCTCGATTTCGGCCTGGAC
TTCGCCGACCTGGCGGAGACCCCGGTCGACGCCAAGGGCGACGGCCTGGGTGATTTCTCCCTGGACCTCGATGCGCCGGA
AGACAAGCTGTCGGATGACGATTTCCTGCTCTCGCTGAATGACGACGCGGCCGCCGCGGCGCCCGCCGACAACGGGTTCG
GCCTCGACACCGAGGCTGCCGACGAGCCGTCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGACGAACCGGCG
GAGCCGGCCGTCCCGGCGAAGAGCGAAGACAGTTTTGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAATTGGC
CAGCAATCTTGACGAGCCGAAGAATGCGGCGCCGAGCTTCTCGGCCGAGGATGCGGCGATCGCCTCGACCCTGGATGGGG
AATCCGACGACGACTTCGATTTCCTTTCCGGCGCCGATGAAGCGGCGACCAAGCTGGATCTGGCGCGTGCCTATATCGAC
ATGGGCGACAGCGAGGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGCAACGACAGCCAGCAGGCGGAAGCCCG
CGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

90.126

52.079

0.469