Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H4995_RS00470 Genome accession   NZ_CP059972
Coordinates   87678..88226 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C220     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 82678..93226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4995_RS00435 (H4995_00435) - 82868..83293 (+) 426 WP_032580822.1 GNAT family N-acetyltransferase -
  H4995_RS00440 (H4995_00440) - 83357..83977 (+) 621 WP_057044061.1 nitroreductase family protein -
  H4995_RS00445 (H4995_00445) - 83977..84582 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  H4995_RS00450 (H4995_00450) pgsA 84707..85243 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H4995_RS00455 (H4995_00455) rseP 85240..86346 (+) 1107 WP_002934663.1 RIP metalloprotease RseP -
  H4995_RS00460 (H4995_00460) - 86339..87205 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  H4995_RS00465 (H4995_00465) rpsF 87292..87669 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  H4995_RS00470 (H4995_00470) ssb 87678..88226 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  H4995_RS00475 (H4995_00475) rpsR 88237..88497 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  H4995_RS00480 (H4995_00480) lon 88557..90932 (-) 2376 WP_002853487.1 endopeptidase La -
  H4995_RS00485 (H4995_00485) - 90949..91596 (-) 648 WP_011049880.1 outer membrane protein assembly factor BamD -
  H4995_RS00490 (H4995_00490) fliW 91757..92146 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  H4995_RS00495 (H4995_00495) proC 92146..92877 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  H4995_RS00500 (H4995_00500) ctsT 92874..93176 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=412116 H4995_RS00470 WP_002860190.1 87678..88226(+) (ssb) [Campylobacter jejuni strain C220]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=412116 H4995_RS00470 WP_002860190.1 87678..88226(+) (ssb) [Campylobacter jejuni strain C220]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363

Multiple sequence alignment