Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GRT15_RS11805 Genome accession   NZ_CP047157
Coordinates   2468834..2469142 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-45028     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2463834..2474142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT15_RS11755 (GRT15_11755) sinR 2463999..2464334 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  GRT15_RS11760 (GRT15_11760) tasA 2464382..2465167 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  GRT15_RS11765 (GRT15_11765) sipW 2465231..2465815 (-) 585 WP_012117977.1 signal peptidase I SipW -
  GRT15_RS11770 (GRT15_11770) tapA 2465787..2466458 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  GRT15_RS11775 (GRT15_11775) - 2466717..2467046 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  GRT15_RS11780 (GRT15_11780) - 2467086..2467265 (-) 180 WP_003153093.1 YqzE family protein -
  GRT15_RS11785 (GRT15_11785) comGG 2467322..2467699 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  GRT15_RS11790 (GRT15_11790) comGF 2467700..2468200 (-) 501 WP_235570156.1 competence type IV pilus minor pilin ComGF -
  GRT15_RS11795 (GRT15_11795) comGE 2468109..2468423 (-) 315 WP_057080485.1 competence type IV pilus minor pilin ComGE Machinery gene
  GRT15_RS11800 (GRT15_11800) comGD 2468407..2468844 (-) 438 WP_015388002.1 competence type IV pilus minor pilin ComGD Machinery gene
  GRT15_RS11805 (GRT15_11805) comGC 2468834..2469142 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  GRT15_RS11810 (GRT15_11810) comGB 2469147..2470184 (-) 1038 WP_063174751.1 competence type IV pilus assembly protein ComGB Machinery gene
  GRT15_RS11815 (GRT15_11815) comGA 2470171..2471241 (-) 1071 WP_044053465.1 competence type IV pilus ATPase ComGA Machinery gene
  GRT15_RS11820 (GRT15_11820) - 2471433..2472383 (-) 951 WP_014305415.1 magnesium transporter CorA family protein -
  GRT15_RS11825 (GRT15_11825) - 2472529..2473830 (+) 1302 WP_014305416.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=411152 GRT15_RS11805 WP_003153087.1 2468834..2469142(-) (comGC) [Bacillus velezensis strain FJAT-45028]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=411152 GRT15_RS11805 WP_003153087.1 2468834..2469142(-) (comGC) [Bacillus velezensis strain FJAT-45028]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGCAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment