Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   H2785_RS02985 Genome accession   NZ_CP059546
Coordinates   619077..619592 (-) Length   171 a.a.
NCBI ID   WP_000477148.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10_4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 614077..624592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2785_RS02960 (H2785_02960) - 614624..616267 (+) 1644 WP_000281764.1 nitrite/sulfite reductase -
  H2785_RS02965 (H2785_02965) - 616260..616745 (+) 486 WP_000935247.1 DUF934 domain-containing protein -
  H2785_RS02970 (H2785_02970) - 616827..617180 (+) 354 WP_000457781.1 DMT family transporter -
  H2785_RS02975 (H2785_02975) - 617223..617666 (-) 444 WP_001176580.1 VOC family protein -
  H2785_RS02980 (H2785_02980) - 617793..618968 (-) 1176 WP_000129968.1 thiolase family protein -
  H2785_RS02985 (H2785_02985) fimT 619077..619592 (-) 516 WP_000477148.1 GspH/FimT family pseudopilin Machinery gene
  H2785_RS02990 (H2785_02990) omp38 619974..621044 (+) 1071 WP_000777878.1 outer membrane protein Omp38 -
  H2785_RS02995 (H2785_02995) - 621169..621312 (-) 144 WP_162138624.1 hypothetical protein -
  H2785_RS03000 (H2785_03000) - 621331..622536 (-) 1206 WP_223069897.1 RtcB family protein -
  H2785_RS03005 (H2785_03005) - 622813..624273 (-) 1461 WP_223069898.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19647.95 Da        Isoelectric Point: 9.1429

>NTDB_id=410697 H2785_RS02985 WP_000477148.1 619077..619592(-) (fimT) [Acinetobacter baumannii strain 10_4]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKKFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=410697 H2785_RS02985 WP_000477148.1 619077..619592(-) (fimT) [Acinetobacter baumannii strain 10_4]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAAGTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427

Multiple sequence alignment