Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPX94_RS04145 Genome accession   NZ_CP046848
Coordinates   897657..899183 (-) Length   508 a.a.
NCBI ID   WP_078927471.1    Uniprot ID   A0A1T4SAT2
Organism   Vibrio cincinnatiensis strain F8054     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 892657..904183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS04120 - 893621..893788 (+) 168 WP_115174042.1 hypothetical protein -
  GPX94_RS04125 - 893973..894239 (+) 267 WP_078927468.1 YihD family protein -
  GPX94_RS04130 ccoG 894455..895852 (+) 1398 WP_154115069.1 cytochrome c oxidase accessory protein CcoG -
  GPX94_RS04135 - 895901..896887 (+) 987 WP_154115070.1 serine/threonine protein kinase -
  GPX94_RS04140 - 896918..897517 (+) 600 WP_078927470.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPX94_RS04145 comM 897657..899183 (-) 1527 WP_078927471.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPX94_RS04150 ilvG 899663..901309 (+) 1647 WP_154115071.1 acetolactate synthase 2 catalytic subunit -
  GPX94_RS04155 ilvM 901320..901604 (+) 285 WP_078927473.1 acetolactate synthase 2 small subunit -
  GPX94_RS04160 ilvE 901616..902554 (+) 939 WP_078927474.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55814.02 Da        Isoelectric Point: 8.7837

>NTDB_id=408863 GPX94_RS04145 WP_078927471.1 897657..899183(-) (comM) [Vibrio cincinnatiensis strain F8054]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFNLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQLPLNHLERYEFIGELALSGEIRRVKGVLPAALAAHKAKRSLVVPQENGDQAALVSEGLHRSAQTL
IEVCADLCGQKNLTLFQSNKQHQPLNHQRDLQDIIGQQQGKRALEIAAAGSHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTEQDINQHNWKLRPFRSPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQVILRYLSRLSGPLLDRFDMSIEIPALPKGTLSQGGDR
GENTETVRQRVLVARERMIARSGKVNALLQSREIETYCRLHKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEVD
IQRTHLAEALGYRSMDRLLKQLSAQAVF

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=408863 GPX94_RS04145 WP_078927471.1 897657..899183(-) (comM) [Vibrio cincinnatiensis strain F8054]
ATGGGACTTGCGATTATCCATAGTCGAGCCAGCATAGGGGTTCAAGCACCAGCGGTGACCGTTGAGGTTCATATCAGTAA
TGGTATGCCCGGATTTAATCTGGTTGGTCTACCGGAAACTACGGTGAAAGAGTCACGGGATCGAGTGCGTAGCGCCATCA
TTAATTCTCGCTTTGAATTTCCTGCCAAACGAATTACCGTAAATTTAGCGCCAGCAGATCTACCAAAAGAAGGTGGGCGG
TTTGATCTGCCGATCGCATTAGGTATTTTAGCCGCTTCAGAACAATTACCTCTTAATCATCTTGAGCGTTATGAATTTAT
TGGTGAACTGGCTTTATCCGGTGAAATTCGGCGGGTGAAAGGGGTTTTACCCGCCGCTTTGGCCGCTCACAAAGCCAAAC
GTAGTTTAGTGGTGCCACAAGAGAATGGCGATCAGGCTGCGCTGGTCAGTGAGGGCTTGCATAGATCGGCACAGACACTC
ATTGAGGTTTGTGCCGATCTGTGTGGTCAGAAAAACTTGACGCTTTTTCAAAGTAATAAACAGCATCAACCGTTGAATCA
TCAACGCGATCTACAAGATATTATTGGTCAGCAACAAGGGAAGCGTGCATTAGAAATTGCGGCGGCAGGGAGCCATAACT
TATTGTTTCTTGGCCCGCCAGGGACCGGTAAAACCATGTTAGCGTCACGCTTGTGTGATTTATTACCCGAAATGAGCGAT
GAAGAGGCGATGGAAACGGCATCGGTTGCTTCGCTCACCGAGCAAGATATTAACCAGCATAATTGGAAGTTGCGCCCTTT
TCGTTCGCCTCATCACTCGAGTTCGATGGCTGCACTGGTGGGTGGGGGGACGATTCCAAGGCCGGGAGAAATCTCTCTGG
CACACAATGGTTTGCTTTTTTTAGATGAAATGCCAGAGTTTGAGCGTAAAGTGCTCGATTCGCTGCGAGAGCCTCTTGAA
TCGGGAGAGATTATTATTTCTCGGGCACAGGGTAAAACGCGTTTTCCAGCTCGCTTTCAATTGGTGGGGGCGCTTAATCC
GAGCCCGACAGGCTACTATGAAGGTAATCAGGCTCGGGTGAATCCTCAGGTTATTTTGCGTTATTTAAGCCGATTATCAG
GTCCACTATTGGATAGATTTGATATGTCGATAGAGATTCCAGCTTTGCCGAAAGGAACCTTATCTCAAGGGGGGGATCGA
GGTGAGAATACAGAGACAGTTCGTCAACGTGTGTTGGTGGCGAGAGAGCGAATGATAGCGAGAAGCGGTAAGGTCAATGC
TTTATTACAGAGTCGTGAAATAGAGACGTATTGCCGACTGCATAAAGCAGATGCGGAATTTTTAGAAAGTGCCTTACATC
GCTTAGGGTTATCAATACGAGCTTATCATCGCATCATTAAAGTGGCACGGACCATCGCAGATTTACAAGGAGAAGTGGAT
ATTCAGCGGACCCATTTGGCTGAAGCTTTAGGTTATCGTTCTATGGATAGGCTACTGAAACAATTATCTGCTCAGGCGGT
GTTCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4SAT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

88.166

99.803

0.88
  comM Vibrio campbellii strain DS40M4

83.037

99.803

0.829
  comM Haemophilus influenzae Rd KW20

66.469

99.803

0.663
  comM Glaesserella parasuis strain SC1401

64.51

100

0.648
  comM Legionella pneumophila str. Paris

50

97.638

0.488
  comM Legionella pneumophila strain ERS1305867

50

97.638

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

99.803

0.439

Multiple sequence alignment