Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY00_RS19500 Genome accession   NZ_CP046747
Coordinates   1543066..1543926 (-) Length   286 a.a.
NCBI ID   WP_158128687.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3541-04     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1538066..1548926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY00_RS07205 gspL 1538323..1539534 (+) 1212 WP_071188138.1 type II secretion system protein GspL -
  GPY00_RS07210 gspM 1539544..1540041 (+) 498 WP_199252366.1 type II secretion system protein GspM -
  GPY00_RS07215 - 1540043..1540801 (+) 759 WP_158128530.1 type II secretion system protein N -
  GPY00_RS07220 cysQ 1540853..1541680 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY00_RS07225 nudE 1541703..1542251 (-) 549 WP_000095817.1 ADP compounds hydrolase NudE -
  GPY00_RS07230 nfuA 1542391..1542978 (-) 588 WP_158128531.1 Fe-S biogenesis protein NfuA -
  GPY00_RS19500 comF 1543066..1543926 (-) 861 WP_158128687.1 ComF family protein Machinery gene
  GPY00_RS07240 bioH 1543862..1544623 (+) 762 WP_172777771.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY00_RS07245 - 1544785..1545255 (+) 471 WP_199252368.1 ATP-dependent Lon protease -
  GPY00_RS07250 - 1545350..1547671 (-) 2322 WP_046121300.1 Tex family protein -
  GPY00_RS07255 greB 1547916..1548398 (+) 483 WP_001965872.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32607.58 Da        Isoelectric Point: 8.1643

>NTDB_id=407075 GPY00_RS19500 WP_158128687.1 1543066..1543926(-) (comF) [Vibrio cholerae strain 3541-04]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCIGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANMLNVEYYHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=407075 GPY00_RS19500 WP_158128687.1 1543066..1543926(-) (comF) [Vibrio cholerae strain 3541-04]
ATACCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAACTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGTCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGCCAGCCTCCGCCGTGGCGAAAACTGATGTGTATCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATATGCTAAACGTTGAGTATTACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(219-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

99.301

100

0.993
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment