Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY00_RS03670 Genome accession   NZ_CP046747
Coordinates   812543..813061 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3541-04     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 807543..818061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY00_RS03645 rimM 807652..808206 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  GPY00_RS03650 rpsP 808234..808482 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  GPY00_RS03655 ffh 808718..810103 (-) 1386 WP_000462715.1 signal recognition particle protein -
  GPY00_RS03660 - 810316..811110 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  GPY00_RS03665 - 811193..812473 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  GPY00_RS03670 luxS 812543..813061 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  GPY00_RS03675 gshA 813110..814684 (-) 1575 WP_044126965.1 glutamate--cysteine ligase -
  GPY00_RS03680 - 814796..817651 (-) 2856 WP_044126964.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=407043 GPY00_RS03670 WP_001130227.1 812543..813061(-) (luxS) [Vibrio cholerae strain 3541-04]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407043 GPY00_RS03670 WP_001130227.1 812543..813061(-) (luxS) [Vibrio cholerae strain 3541-04]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCTGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment