Detailed information NTG0405923

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: HZR12_RS06175
• Genome accession: NZ_CP058615
• Coordinates: 1208496..1209182 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692870.1
• Uniprot ID: Q8NW77
• Organism: Staphylococcus aureus strain 110900
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1203496..1214182

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZR12_RS06160 (HZR12_06160)	-	1203608..1206238 (+)	2631	WP_000425353.1	valine--tRNA ligase	-
HZR12_RS06165 (HZR12_06165)	-	1206251..1207522 (+)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
HZR12_RS06170 (HZR12_06170)	-	1207792..1208499 (+)	708	WP_000261115.1	A24 family peptidase	-
HZR12_RS06175 (HZR12_06175)	ysxA/radC	1208496..1209182 (+)	687	WP_000692870.1	DNA repair protein RadC	Machinery gene
HZR12_RS06180 (HZR12_06180)	-	1209250..1209534 (+)	285	WP_000171859.1	hypothetical protein	-
HZR12_RS06185 (HZR12_06185)	-	1209651..1209848 (-)	198	WP_000025835.1	hypothetical protein	-
HZR12_RS06190 (HZR12_06190)	-	1210008..1210481 (+)	474	WP_001236735.1	DUF4930 family protein	-
HZR12_RS06195 (HZR12_06195)	-	1210555..1210674 (+)	120	WP_000840602.1	hypothetical protein	-
HZR12_RS06200 (HZR12_06200)	mreC	1210874..1211716 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
HZR12_RS06205 (HZR12_06205)	mreD	1211716..1212246 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
HZR12_RS06210 (HZR12_06210)	rplU	1212413..1212721 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
HZR12_RS06215 (HZR12_06215)	-	1212727..1213047 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
HZR12_RS06220 (HZR12_06220)	rpmA	1213059..1213343 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.28 Da
• Isoelectric Point: 7.0539

>NTDB_id=405923 HZR12_RS06175 WP_000692870.1 1208496..1209182(+) (ysxA/radC) [Staphylococcus aureus strain 110900]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=405923 HZR12_RS06175 WP_000692870.1 1208496..1209182(+) (ysxA/radC) [Staphylococcus aureus strain 110900]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

3D structure

• AlphaFold DB: Q8NW77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377