Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GO005_RS07945 Genome accession   NZ_CP046592
Coordinates   1512780..1513355 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1507780..1518355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS07915 (GO005_07905) dapD 1507966..1508676 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GO005_RS07920 (GO005_07910) dapI 1508746..1509870 (+) 1125 WP_032721474.1 N-acetyldiaminopimelate deacetylase -
  GO005_RS07925 (GO005_07915) ykuS 1509932..1510177 (+) 246 WP_003232382.1 YkuS family protein -
  GO005_RS07930 (GO005_07920) mscT 1510214..1511017 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  GO005_RS07935 (GO005_07925) ahpA 1511254..1511796 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  GO005_RS07940 (GO005_07930) ykuV 1511868..1512314 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  GO005_RS07945 (GO005_07935) rok 1512780..1513355 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  GO005_RS07950 (GO005_07940) cse15 1513396..1514361 (-) 966 WP_032721476.1 spore protein Cse15 -
  GO005_RS07955 (GO005_07945) mobA 1514498..1515097 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  GO005_RS07960 (GO005_07950) moeB 1515148..1516167 (+) 1020 WP_032721477.1 molybdopterin-synthase adenylyltransferase MoeB -
  GO005_RS07965 (GO005_07955) glp 1516185..1517477 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  GO005_RS07970 (GO005_07960) mobB 1517438..1517959 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=405867 GO005_RS07945 WP_003232378.1 1512780..1513355(+) (rok) [Bacillus subtilis strain TR21]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=405867 GO005_RS07945 WP_003232378.1 1512780..1513355(+) (rok) [Bacillus subtilis strain TR21]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment