Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GNX71_RS02245 Genome accession   NZ_CP046508
Coordinates   483674..484228 (+) Length   184 a.a.
NCBI ID   WP_206179318.1    Uniprot ID   -
Organism   Variovorax sp. RKNM96     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 478674..489228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX71_RS02235 (GNX71_02225) - 479482..480369 (-) 888 WP_206176820.1 DMT family transporter -
  GNX71_RS02240 (GNX71_02230) uvrA 480385..483501 (-) 3117 WP_206176821.1 excinuclease ABC subunit UvrA -
  GNX71_RS02245 (GNX71_02235) ssb 483674..484228 (+) 555 WP_206179318.1 single-stranded DNA-binding protein Machinery gene
  GNX71_RS02250 (GNX71_02240) - 484468..486336 (+) 1869 WP_241027294.1 sensor histidine kinase -
  GNX71_RS02255 (GNX71_02245) - 486361..486789 (-) 429 WP_241027135.1 GFA family protein -
  GNX71_RS02260 (GNX71_02250) - 486820..487533 (-) 714 WP_206176824.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GNX71_RS02265 (GNX71_02255) - 487670..488515 (+) 846 WP_206176825.1 isocitrate lyase/phosphoenolpyruvate mutase family protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19414.29 Da        Isoelectric Point: 5.9554

>NTDB_id=404766 GNX71_RS02245 WP_206179318.1 483674..484228(+) (ssb) [Variovorax sp. RKNM96]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGYSQGGNGGGGGGYAPRAPAAAPRAP
SAAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=404766 GNX71_RS02245 WP_206179318.1 483674..484228(+) (ssb) [Variovorax sp. RKNM96]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAAATGCGTACCTTCCCGAGCGGCGACCA
GGTCGCGAACGTCACAGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAATGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTCGAAGGT
TCCTTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCCCGTCGGGCGGTCCGGAGGACGATGGCGGTTATTCGCAAGGCGGCGGTGGCG
GTGGCTACTCGCAGGGCGGCAATGGCGGCGGCGGTGGTGGCTACGCCCCCCGCGCTCCCGCAGCGGCACCCCGCGCACCC
TCGGCCGCGCCGCGTCAGGCACCGGCCAAGTCGTCGTCGGGATTCGACGACATGGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.125

100

0.554
  ssb Vibrio cholerae strain A1552

47.396

100

0.495
  ssb Neisseria gonorrhoeae MS11

46.448

99.457

0.462
  ssb Neisseria meningitidis MC58

45.355

99.457

0.451

Multiple sequence alignment