Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HWU18_RS00335 Genome accession   NZ_CP058252
Coordinates   63121..63387 (+) Length   88 a.a.
NCBI ID   WP_017284177.1    Uniprot ID   -
Organism   Helicobacter pylori strain NP05-124     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 58121..68387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU18_RS00315 - 60208..60987 (+) 780 WP_025276173.1 hypothetical protein -
  HWU18_RS00320 - 61007..61300 (+) 294 WP_237004387.1 hypothetical protein -
  HWU18_RS00325 - 61307..62821 (+) 1515 WP_237004388.1 toprim domain-containing protein -
  HWU18_RS00330 - 62818..63120 (+) 303 WP_237004389.1 virB2 type IV secretion protein -
  HWU18_RS00335 comB3 63121..63387 (+) 267 WP_017284177.1 hypothetical protein Machinery gene
  HWU18_RS00340 - 63434..65799 (+) 2366 Protein_60 VirB4 family type IV secretion/conjugal transfer ATPase -
  HWU18_RS00350 - 65802..67844 (+) 2043 WP_237004391.1 type IA DNA topoisomerase -
  HWU18_RS07950 - 67961..68326 (+) 366 WP_240444701.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10144.95 Da        Isoelectric Point: 4.8782

>NTDB_id=404246 HWU18_RS00335 WP_017284177.1 63121..63387(+) (comB3) [Helicobacter pylori strain NP05-124]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAIGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=404246 HWU18_RS00335 WP_017284177.1 63121..63387(+) (comB3) [Helicobacter pylori strain NP05-124]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTGTCATTCCAACCACTTTATGCTATAGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTATATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACCTTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398