Detailed information NTG0404237

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GN308_RS05220
• Genome accession: NZ_CP046427
• Coordinates: 1285549..1286916 (-)
• Length: 455 a.a.
• NCBI ID: WP_007842266.1
• Uniprot ID: A0AAX2R1C6
• Organism: Phocaeicola dorei strain JR04
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1280549..1291916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GN308_RS05205 (GN308_05240)	-	1282594..1283118 (+)	525	WP_007836748.1	flavodoxin	-
GN308_RS05210 (GN308_05245)	-	1283204..1284847 (-)	1644	WP_007853255.1	NAD(P)/FAD-dependent oxidoreductase	-
GN308_RS05215 (GN308_05250)	-	1284862..1285503 (-)	642	WP_007836750.1	DUF1847 domain-containing protein	-
GN308_RS05220 (GN308_05255)	radA	1285549..1286916 (-)	1368	WP_007842266.1	DNA repair protein RadA	Machinery gene
GN308_RS05225 (GN308_05260)	-	1287173..1288054 (+)	882	WP_007836753.1	DUF3078 domain-containing protein	-
GN308_RS05230 (GN308_05265)	thrA	1288652..1291084 (+)	2433	WP_008653135.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49932.50 Da
• Isoelectric Point: 6.5039

>NTDB_id=404237 GN308_RS05220 WP_007842266.1 1285549..1286916(-) (radA) [Phocaeicola dorei strain JR04]
MAKEKTVYVCTNCGQDSPKWVGKCPSCGAWNTYVEEVVRKEPANKRPVSGLEPVKSKPVTLNDITGGDEPRIDMQDEELN
RVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLPDRKVLYISGEESTRQLKLRADRIPHNSSDCLIVCETSLEQIYIHI
KNTQPDLVIIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDHDGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEVERDTCMAGEVGLSGEI
RPVNRIEQRIGEAEKLGFKRILIPKHNLQGMDTSKLKIEIIPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=404237 GN308_RS05220 WP_007842266.1 1285549..1286916(-) (radA) [Phocaeicola dorei strain JR04]
ATGGCAAAGGAAAAAACTGTATATGTATGCACCAACTGTGGGCAGGATTCACCCAAATGGGTAGGGAAATGTCCGTCTTG
CGGTGCATGGAACACATACGTAGAAGAAGTTGTACGCAAGGAACCTGCAAATAAAAGACCGGTATCCGGTCTGGAACCCG
TAAAAAGCAAGCCTGTCACACTGAATGACATAACCGGAGGAGACGAGCCTCGAATTGATATGCAAGACGAAGAGCTGAAC
CGGGTATTGGGAGGTGGCTTAGTACCGGGCTCACTCGTTTTACTGGGTGGTGAACCGGGGATAGGCAAATCTACCTTGGT
GTTGCAAACCGTACTTCATCTGCCTGACAGAAAAGTATTGTATATTTCGGGAGAAGAAAGTACACGACAATTAAAACTAC
GTGCAGACCGTATCCCGCATAATTCTTCCGACTGCCTGATCGTCTGTGAAACTTCATTGGAGCAGATTTATATACATATA
AAGAATACACAACCCGATCTCGTCATCATCGACTCTATTCAAACCATCTCCACTGAAACAATAGACTCTTCTCCCGGCAG
TTTAGTACAGGTGCGTGAATGTTCCGCCTCTATTTTGAAATTTGCCAAAGAAACAAATACGCCGGTCATCTTAATCGGCC
ATATCAATAAAGAAGGAAGCATTGCCGGACCGAAAGTACTGGAACATATTGTAGACACCGTATTGCAATTTGAAGGTGAC
CAACATTATATGTACCGCATTCTTCGCAGCATCAAGAACCGTTTCGGAAGCACTGCCGAACTGGGCATTTATGAAATGCG
ACAAAATGGTTTGCGCCAAGTGAGTAACCCGTCCGAACTGTTGCTTAGCCAAGACCATGACGGAATGAGTGGAGTCGCTA
TCGCCTCTGCCATAGAAGGTGTCCGTCCTTTCTTAATTGAAACACAAGCCTTAGTCAGTTCGGCTGTATATGGAAATCCG
CAACGTTCTGCCACCGGATTTGATTTACGACGTATGAATATGCTTCTGGCAGTACTCGAAAAACGGGTAGGATTCAAACT
GGCACAAAAAGATGTCTTTTTAAACATTGCGGGTGGATTGAAAGTGAATGATCCGGCCATCGACCTGTCTGTCATCAGTG
CCATTCTATCCAGCAATATGGATACAGAGGTAGAACGCGATACCTGCATGGCCGGAGAAGTGGGACTAAGTGGTGAAATC
CGACCTGTAAACCGTATTGAACAGCGAATCGGAGAAGCGGAAAAGTTAGGCTTTAAACGAATCCTTATACCAAAACATAA
TTTACAAGGAATGGATACATCAAAATTGAAAATAGAAATTATTCCGGTCAGAAAAGTGGAAGAAGCATTCCGGGCCTTGT
TTGGATAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (73-219)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	52.505	100	0.53
radA	Streptococcus mitis SK321	48.904	100	0.49
radA	Streptococcus pneumoniae Rx1	48.904	100	0.49
radA	Streptococcus pneumoniae D39	48.904	100	0.49
radA	Streptococcus pneumoniae R6	48.904	100	0.49
radA	Streptococcus pneumoniae TIGR4	48.904	100	0.49
radA	Streptococcus mitis NCTC 12261	48.904	100	0.49