Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GMY06_RS01870 Genome accession   NZ_CP046374
Coordinates   436336..437697 (+) Length   453 a.a.
NCBI ID   WP_011962283.1    Uniprot ID   -
Organism   Flavobacterium psychrophilum strain CN6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 431336..442697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMY06_RS01845 (GMY06_01845) - 431910..432719 (-) 810 WP_011962288.1 glycogen/starch synthase -
  GMY06_RS01850 (GMY06_01850) panC 432828..433676 (+) 849 WP_011962287.1 pantoate--beta-alanine ligase -
  GMY06_RS01855 (GMY06_01855) panD 433690..434040 (+) 351 WP_011962286.1 aspartate 1-decarboxylase -
  GMY06_RS01860 (GMY06_01860) - 434045..435004 (+) 960 WP_011962285.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  GMY06_RS01865 (GMY06_01865) - 435053..436333 (+) 1281 WP_034099958.1 alpha/beta hydrolase -
  GMY06_RS01870 (GMY06_01870) radA 436336..437697 (+) 1362 WP_011962283.1 DNA repair protein RadA Machinery gene
  GMY06_RS01875 (GMY06_01875) - 437731..437958 (+) 228 WP_011962282.1 hypothetical protein -
  GMY06_RS01880 (GMY06_01880) - 437955..438242 (+) 288 WP_011962281.1 type II toxin-antitoxin system RelE/ParE family toxin -
  GMY06_RS01885 (GMY06_01885) - 438250..438765 (+) 516 WP_011962280.1 hypothetical protein -
  GMY06_RS01890 (GMY06_01890) - 438772..440727 (+) 1956 WP_011962279.1 transglycosylase domain-containing protein -
  GMY06_RS01895 (GMY06_01895) - 440857..442674 (+) 1818 WP_034099956.1 DUF4139 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49988.49 Da        Isoelectric Point: 6.1021

>NTDB_id=403575 GMY06_RS01870 WP_011962283.1 436336..437697(+) (radA) [Flavobacterium psychrophilum strain CN6]
MAKVKTSFFCQSCGSQYSKWQGQCNACKEWNTIVEEIIQKEEKVAWKAETSEVKKASKPLLVKEIDSTQEIRMNTCDGEL
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITTNGDNCYILTETKTQNIFRQI
QEIEPEIVIIDSIQTLHTDYIESSPGSISQIRETTAELIKFAKETNVPVILIGHITKDGSIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMQGSGLREVSNPSEILISHKNEELSGTAIASTLEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNEDIPINKDFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIYVSKYNKISLKNTGIKIQLVAKIEDIVSELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=403575 GMY06_RS01870 WP_011962283.1 436336..437697(+) (radA) [Flavobacterium psychrophilum strain CN6]
ATGGCCAAAGTAAAAACATCTTTTTTTTGCCAAAGTTGCGGCTCACAATACTCTAAATGGCAAGGACAATGCAACGCTTG
CAAAGAATGGAACACCATTGTTGAAGAAATTATTCAAAAAGAAGAAAAAGTAGCTTGGAAAGCCGAAACATCGGAAGTAA
AAAAAGCTTCTAAACCACTTTTAGTAAAAGAAATAGACAGCACACAAGAAATCCGAATGAACACTTGCGATGGCGAACTA
AATCGAGTACTTGGTGGTGGCATAGTTCCTGGATCATTAATACTCTTAGGAGGAGAACCCGGCATTGGAAAAAGTACGCT
TTTACTTCAAATTTCGTTAAAATTACCCTACAAAACCTTATATGTTTCAGGCGAAGAAAGTCAGAAGCAAATAAAAATGC
GTGCCGAAAGAATTACCACAAACGGCGACAATTGTTACATATTAACAGAAACCAAAACTCAAAATATATTTCGACAAATT
CAGGAAATAGAACCTGAAATTGTCATTATAGATTCGATTCAAACATTGCATACAGATTATATCGAGTCTTCGCCTGGAAG
TATTTCTCAAATTCGAGAAACCACTGCCGAACTCATAAAATTTGCCAAAGAAACCAATGTTCCCGTTATCCTAATTGGTC
ATATTACCAAAGACGGAAGCATTGCTGGACCTAAAATTTTGGAACACATGGTGGATACTGTTTTACAATTTGAAGGAGAT
AGAAACCACGTGTATCGGATTCTTCGGTCGTTAAAAAATCGTTTTGGTTCTACTGCCGAACTCGGTATTTACGAAATGCA
AGGTTCCGGATTGCGAGAAGTTTCTAATCCATCAGAAATATTGATATCGCACAAAAACGAAGAATTATCCGGAACAGCAA
TTGCTTCAACGCTAGAGGGAATGCGGCCACTGATGATAGAAATTCAAGCATTAGTATCTACCGCTGTTTACGGAACACCG
CAACGAAGCACCACAGGCTACAATGCCAAACGACTCAATATGATTCTCGCTGTTCTCGAAAAAAGAGCCGGATTTCGTTT
GGGAGCTAAAGATGTTTTCCTAAATATTACTGGCGGAATTTCGGTAGATGATCCTGCGATAGATTTAGCTGTGGTTGCTG
CTATATTATCATCTAACGAAGATATTCCTATTAATAAAGATTTTTGTTTTGCAGGCGAAGTAGGACTTTCGGGCGAAATT
CGTCCGGTAAATCGCGTCGACCAACGCATTCAAGAAGCAGAAAAATTAGGTTTTTCGACCATTTACGTATCTAAATACAA
TAAAATTTCATTAAAAAACACTGGAATCAAAATACAATTAGTTGCAAAAATTGAAGATATTGTAAGTGAATTGTTTGGGT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(315-427)

AAA domain (AAA_25)

(71-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.497
  radA Streptococcus mitis SK321

49.015

100

0.494
  radA Streptococcus pneumoniae Rx1

49.015

100

0.494
  radA Streptococcus pneumoniae D39

49.015

100

0.494
  radA Streptococcus pneumoniae R6

49.015

100

0.494
  radA Streptococcus pneumoniae TIGR4

49.015

100

0.494
  radA Streptococcus mitis NCTC 12261

49.015

100

0.494

Multiple sequence alignment