Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HWH78_RS16730 Genome accession   NZ_CP056774
Coordinates   3614412..3614741 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain CDN129     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3609412..3619741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH78_RS16715 (HWH78_16715) uvrB 3610799..3612811 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  HWH78_RS16720 (HWH78_16720) - 3612999..3614195 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  HWH78_RS16730 (HWH78_16730) comEA/comE1 3614412..3614741 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  HWH78_RS16735 (HWH78_16735) - 3614932..3616929 (-) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  HWH78_RS16740 (HWH78_16740) - 3617127..3618164 (-) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  HWH78_RS16745 (HWH78_16745) - 3618164..3619126 (-) 963 WP_016253165.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=403520 HWH78_RS16730 WP_003104586.1 3614412..3614741(-) (comEA/comE1) [Pseudomonas aeruginosa strain CDN129]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=403520 HWH78_RS16730 WP_003104586.1 3614412..3614741(-) (comEA/comE1) [Pseudomonas aeruginosa strain CDN129]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAATTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385