Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HUS10_RS29270 Genome accession   NZ_CP054843
Coordinates   6288351..6288875 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain SE5352     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6283351..6293875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUS10_RS29255 (HUS10_29260) aroB 6284467..6285573 (-) 1107 WP_003095831.1 3-dehydroquinate synthase -
  HUS10_RS29260 (HUS10_29265) aroK 6285623..6286141 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HUS10_RS29265 (HUS10_29270) pilQ 6286153..6288297 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  HUS10_RS29270 (HUS10_29275) comL/pilP 6288351..6288875 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HUS10_RS29275 (HUS10_29280) pilO 6288872..6289495 (-) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  HUS10_RS29280 (HUS10_29285) pilN 6289492..6290088 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HUS10_RS29285 (HUS10_29290) pilM 6290088..6291152 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HUS10_RS29290 (HUS10_29295) - 6291337..6293808 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=401677 HUS10_RS29270 WP_003095836.1 6288351..6288875(-) (comL/pilP) [Pseudomonas aeruginosa strain SE5352]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=401677 HUS10_RS29270 WP_003095836.1 6288351..6288875(-) (comL/pilP) [Pseudomonas aeruginosa strain SE5352]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362