Detailed information NTG0400852

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GGC04_RS07345
• Genome accession: NZ_CP046065
• Coordinates: 1577898..1579322 (-)
• Length: 474 a.a.
• NCBI ID: WP_006962037.1
• Uniprot ID: A0AAJ4AFA0
• Organism: Vibrio sp. THAF191d
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1572898..1584322

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GGC04_RS07325 (GGC04_07370)	-	1574312..1575514 (+)	1203	WP_031343039.1	HD-GYP domain-containing protein	-
GGC04_RS07330 (GGC04_07375)	cdd	1575569..1576456 (-)	888	WP_043007793.1	cytidine deaminase	-
GGC04_RS07335 (GGC04_07380)	-	1576710..1577387 (-)	678	WP_006962033.1	CidB/LrgB family autolysis modulator	-
GGC04_RS07340 (GGC04_07385)	-	1577387..1577752 (-)	366	WP_006962035.1	CidA/LrgA family protein	-
GGC04_RS07345 (GGC04_07390)	sbcB	1577898..1579322 (-)	1425	WP_006962037.1	exodeoxyribonuclease I	Machinery gene
GGC04_RS07350 (GGC04_07395)	-	1579462..1580835 (-)	1374	WP_006962038.1	L-cystine transporter	-
GGC04_RS07355 (GGC04_07400)	-	1581027..1581713 (-)	687	WP_006962039.1	NAD(P)H-binding protein	-
GGC04_RS07360 (GGC04_07405)	-	1582239..1582850 (+)	612	WP_039952349.1	flavin reductase family protein	-
GGC04_RS07365 (GGC04_07410)	cobT	1582857..1583885 (+)	1029	WP_006962041.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54713.02 Da
• Isoelectric Point: 5.0914

>NTDB_id=400852 GGC04_RS07345 WP_006962037.1 1577898..1579322(-) (sbcB) [Vibrio sp. THAF191d]
MQQAHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQKAASKGLPEP
EFITKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENEEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREYEKSDDVDTMLYDGFFSPAAKQSMDIIRETEPKNLSALDISFSDD
RIAPLLFRYRARHFPWTLDESEQQKWAAHSREYFESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVQKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=400852 GGC04_RS07345 WP_006962037.1 1577898..1579322(-) (sbcB) [Vibrio sp. THAF191d]
ATGCAACAAGCGCATCAACCTACGTTTTTCTTCTTCGATTATGAAACGTGGGGAACCAGCCCAGCAAAAGACAGACCGTC
CCAGTTTGCGGGTGTACGCACCGACATGGATTTCAATATCATCGGTGAGCCTCTTGTTATCTACTGCCAACCGCCTTCAG
ATTATCTTCCATCACCCGAAGCCGCGCTTATCACTGGTATCACACCTCAGAAGGCGGCAAGTAAAGGGTTACCTGAGCCG
GAATTTATTACCAAAATTCATGAGCAGTTGTCCACGCCAAACACCATCAACTTGGGTTACAATAGCATTCGATTTGATGA
CGAAGTGACGCGATATACCTGTTACCGAAATTTCATCGATCCGTATGCGTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ACTTACTCGATGTCATGCGCGCCTGTCACGCCCTTCGCCCAGAAGGTATTAATTGGCCAGAGAATGAAGAAGGTTTTATC
AGCTTTAAGCTAGAGCACTTGTCCGTTGCCAATGGCATTGAGCACGAGAATGCACACGATGCGATGGCTGACGTTATAGC
AACGATTGAAATGGCTAAAAAGGTGAAAGCCGCTCAGCCTAAGCTCTTTGATTATTTCCTTAGCATGCGCCACAAGCGCA
AACTGAACGAACTCGTCGATATCGTGAATATGACACCGCTTATGCACGTATCGGGTATGCTGGGGCGCGAATGCAATTAC
ACTAGCTGGGTGGTTCCGGTCGCTTGGCATCCAACCAACCAGAATGCGGTGATTGTTGTCGATTTAGCGAAAGACCCGCA
GCCGTTGTTGGATTTAGATGTAGAACAACTTAATGAGCGTCTCTACACCAAACATTCTGAACTTGGCCCAGACGAACTGC
CTGTACCAATCAAACTTGTCCATCTCAACAAGTGCCCTATTTTAGCTCCAGCCAAAACATTAACTGCTGAGAATGCAGCT
AACATAGGCATTGACAGAGAAAAATGCTTACAAAACCTTGAGCGACTAAGACAGCACCCTGAGATTAGAGAAAAACTCAA
TTCGCTATACAGTATCGAGAGAGAATACGAAAAGAGCGATGATGTTGATACTATGCTTTACGATGGTTTCTTCTCTCCTG
CGGCAAAGCAATCAATGGATATCATACGAGAAACTGAACCAAAGAATCTTTCCGCCCTTGATATCTCATTCAGTGACGAC
AGAATTGCTCCGCTTCTGTTCCGCTATCGCGCCAGACATTTTCCGTGGACATTGGATGAGAGTGAACAACAAAAATGGGC
AGCACACAGCCGCGAATACTTCGAAAGTCGAATAGAAGACTACATGTTGAATTTGGAAAACTTAGTTCACGAGCATGAGA
GTGACGAAAAAAAGATAGCTATCTTAAAATCTGTTTACCAATACGTTCAAAAGCTAGTATCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.07	99.789	0.789