Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HUK64_RS30470 Genome accession   NZ_CP054786
Coordinates   6519918..6520247 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain DL201330     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6514918..6525247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK64_RS30455 (HUK64_30435) - 6515718..6516674 (+) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -
  HUK64_RS30460 (HUK64_30440) - 6516676..6517695 (+) 1020 WP_003158833.1 MraY family glycosyltransferase -
  HUK64_RS30465 (HUK64_30445) - 6517730..6519727 (+) 1998 WP_031757889.1 polysaccharide biosynthesis protein -
  HUK64_RS30470 (HUK64_30450) comEA/comE1 6519918..6520247 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  HUK64_RS30480 (HUK64_30460) - 6520464..6521663 (-) 1200 WP_198580830.1 amino acid aminotransferase -
  HUK64_RS30485 (HUK64_30465) uvrB 6521851..6523863 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=400787 HUK64_RS30470 WP_003104586.1 6519918..6520247(+) (comEA/comE1) [Pseudomonas aeruginosa strain DL201330]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=400787 HUK64_RS30470 WP_003104586.1 6519918..6520247(+) (comEA/comE1) [Pseudomonas aeruginosa strain DL201330]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385