Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   HTZ88_RS02390 Genome accession   NZ_CP054418
Coordinates   431773..432408 (+) Length   211 a.a.
NCBI ID   WP_014973916.1    Uniprot ID   K0DCT0
Organism   Leuconostoc carnosum strain 4010     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426773..437408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ88_RS02365 (HTZ88_02355) - 427386..428177 (+) 792 WP_014973911.1 metal ABC transporter permease -
  HTZ88_RS02370 (HTZ88_02360) purR 428279..429112 (+) 834 WP_014973912.1 pur operon repressor -
  HTZ88_RS02375 (HTZ88_02365) glmU 429119..430495 (+) 1377 WP_014973913.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  HTZ88_RS02380 (HTZ88_02370) - 430627..431118 (+) 492 WP_014973914.1 hypothetical protein -
  HTZ88_RS02385 (HTZ88_02375) - 431128..431385 (-) 258 WP_014973915.1 hypothetical protein -
  HTZ88_RS02390 (HTZ88_02380) comEA/celA/cilE 431773..432408 (+) 636 WP_014973916.1 helix-hairpin-helix domain-containing protein Machinery gene
  HTZ88_RS02395 (HTZ88_02385) - 432408..434693 (+) 2286 WP_014973917.1 DNA internalization-related competence protein ComEC/Rec2 -
  HTZ88_RS02400 (HTZ88_02390) holA 434662..435663 (+) 1002 WP_014973918.1 DNA polymerase III subunit delta -
  HTZ88_RS02405 (HTZ88_02395) rpsT 435783..436034 (-) 252 WP_014973919.1 30S ribosomal protein S20 -
  HTZ88_RS02410 (HTZ88_02400) rpsO 436084..436353 (-) 270 WP_013103687.1 30S ribosomal protein S15 -
  HTZ88_RS02415 (HTZ88_02405) gatC 436584..436892 (+) 309 WP_014973920.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22748.96 Da        Isoelectric Point: 6.7325

>NTDB_id=399656 HTZ88_RS02390 WP_014973916.1 431773..432408(+) (comEA/celA/cilE) [Leuconostoc carnosum strain 4010]
MMDTFDVIKNKLADYKILIAIVFVILVSGIFLLVHTRTENTPVAAYSAKAVSSVSDTVSSTSSTVKSTTAIMVDIKGAVK
TPGVYDIIDNPRVQTLIARSGGVTAQADINQVNLAQKLTDGQMIYIPVKGERLPNHSTANTPNTNSNQTQVNLNTATIEE
LQTLEGVGAKKAEQIIAYRDEHGGFKSIEEIKQVAGVGDKRFEAIQDKITV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=399656 HTZ88_RS02390 WP_014973916.1 431773..432408(+) (comEA/celA/cilE) [Leuconostoc carnosum strain 4010]
ATGATGGATACATTTGATGTCATAAAAAATAAATTAGCTGATTATAAGATATTAATAGCTATAGTTTTCGTGATTTTAGT
TAGCGGGATTTTTCTTTTAGTGCACACTAGAACAGAAAATACCCCAGTAGCAGCTTATAGTGCCAAGGCTGTGAGTAGTG
TTAGCGATACGGTTAGCAGCACGTCATCTACTGTTAAATCAACTACTGCGATTATGGTTGATATTAAAGGTGCTGTTAAG
ACGCCTGGTGTTTATGATATTATTGATAACCCACGCGTGCAAACTTTGATTGCTAGATCAGGTGGCGTGACTGCACAAGC
AGACATAAACCAAGTCAACTTAGCGCAAAAATTGACTGATGGTCAAATGATTTACATACCGGTGAAAGGTGAGCGTTTAC
CAAATCATTCAACAGCCAATACACCAAATACTAATAGTAATCAGACTCAGGTTAATTTAAACACGGCCACAATTGAGGAA
TTACAAACTTTAGAGGGTGTTGGCGCAAAAAAAGCTGAACAAATTATTGCTTACCGTGACGAACATGGTGGTTTTAAATC
GATTGAAGAAATTAAACAAGTTGCTGGGGTTGGTGATAAACGTTTCGAAGCCATCCAAGATAAAATAACAGTCTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(72-127)

Helix-hairpin-helix motif (HHH_3)

(146-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DCT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.