Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   HTZ78_RS07660 Genome accession   NZ_CP054306
Coordinates   1620256..1620987 (+) Length   243 a.a.
NCBI ID   WP_212721189.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1615256..1625987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS07645 (HTZ78_07640) cas12k 1616519..1618357 (+) 1839 WP_212721185.1 type V CRISPR-associated protein Cas12k -
  HTZ78_RS07655 (HTZ78_07650) - 1619454..1620266 (+) 813 WP_212721187.1 rhodanese-related sulfurtransferase -
  HTZ78_RS07660 (HTZ78_07655) ysxA/radC 1620256..1620987 (+) 732 WP_212721189.1 DNA repair protein RadC Machinery gene
  HTZ78_RS07665 (HTZ78_07660) rpmI 1621058..1621261 (+) 204 WP_028947991.1 50S ribosomal protein L35 -
  HTZ78_RS07670 (HTZ78_07665) rplT 1621402..1621755 (+) 354 WP_010873349.1 50S ribosomal protein L20 -
  HTZ78_RS07675 (HTZ78_07670) lpxD 1621863..1622897 (-) 1035 WP_212721191.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  HTZ78_RS07680 (HTZ78_07675) secF 1623034..1623981 (-) 948 WP_212721193.1 protein translocase subunit SecF -
  HTZ78_RS07685 (HTZ78_07680) secD 1624037..1625452 (-) 1416 WP_212721195.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26925.22 Da        Isoelectric Point: 7.2360

>NTDB_id=398809 HTZ78_RS07660 WP_212721189.1 1620256..1620987(+) (ysxA/radC) [Synechocystis sp. PCC 7338]
MSYSLRIADLPEDERPREKLLKYGAKHLGNAELIAILLATGQGKGKLSAVGLGQYILQQLAQNRQDPMDVLRNIHPQELI
AFPGIGPAKATTILAAVELGKRVFQSRPLEKMVVDSPEAAAIALSQDLMWQTQEHFAIVMLDVKNRLLATKVITIGTATE
TLVHPREIFREVIKQGATRLIVAHNHPSGGLDPSPEDIRLTELLLQGAQYLQIPVLDHLILGHGKHQSLRQCTDLWERFP
QGD

Nucleotide


Download         Length: 732 bp        

>NTDB_id=398809 HTZ78_RS07660 WP_212721189.1 1620256..1620987(+) (ysxA/radC) [Synechocystis sp. PCC 7338]
ATGAGCTATAGCCTGAGAATTGCCGATCTGCCGGAGGATGAACGCCCCAGGGAAAAATTGCTCAAATATGGGGCTAAGCA
TCTGGGCAATGCAGAATTGATTGCCATTCTATTAGCCACGGGTCAGGGTAAAGGTAAGCTGTCGGCGGTGGGGCTAGGGC
AATATATCCTGCAACAGTTGGCACAAAATCGTCAGGATCCCATGGATGTGTTGCGTAATATCCATCCCCAGGAATTAATT
GCTTTTCCTGGCATTGGCCCCGCCAAGGCCACCACAATTTTAGCGGCGGTGGAATTGGGTAAACGGGTGTTTCAAAGTCG
TCCCCTGGAAAAAATGGTGGTTGATAGCCCCGAAGCGGCGGCGATCGCCTTGAGCCAGGATTTGATGTGGCAGACCCAGG
AACATTTTGCCATTGTCATGCTGGACGTAAAAAACCGCTTGCTAGCCACCAAAGTGATCACCATTGGCACCGCCACGGAG
ACCCTAGTTCACCCCAGGGAAATTTTTCGGGAGGTGATTAAACAGGGTGCCACTAGGCTGATTGTGGCCCATAATCATCC
CTCCGGTGGGCTAGATCCGAGCCCAGAAGATATCCGGCTGACAGAATTGCTGCTCCAGGGGGCCCAATACTTGCAAATTC
CGGTATTGGATCATCTCATTTTGGGCCACGGCAAGCACCAGAGTTTACGGCAATGCACAGATTTGTGGGAACGCTTTCCC
CAGGGAGATTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-91)

RadC-like JAB domain (RadC)

(115-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.969

93.416

0.383

Multiple sequence alignment