Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   HR084_RS11530 Genome accession   NZ_CP054177
Coordinates   2299325..2300815 (-) Length   496 a.a.
NCBI ID   WP_038429218.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2294325..2305815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS11500 (HR084_11500) gudB 2294469..2295743 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  HR084_RS11505 (HR084_11505) mecB 2295899..2296483 (-) 585 WP_003230533.1 genetic competence negative regulator -
  HR084_RS11510 (HR084_11510) ypbG 2296642..2297421 (-) 780 WP_003230532.1 metallophosphoesterase -
  HR084_RS11515 (HR084_11515) ypbF 2297508..2297951 (-) 444 WP_029317972.1 YpbF family protein -
  HR084_RS11520 (HR084_11520) claE 2298014..2298745 (-) 732 WP_038429216.1 LysM peptidoglycan-binding domain-containing protein -
  HR084_RS11525 (HR084_11525) ypbD 2298696..2299298 (-) 603 WP_038429217.1 CPBP family intramembrane glutamic endopeptidase -
  HR084_RS11530 (HR084_11530) recS 2299325..2300815 (-) 1491 WP_038429218.1 ATP-dependent DNA helicase RecQ Machinery gene
  HR084_RS11535 (HR084_11535) gmmB 2300808..2301866 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  HR084_RS11540 (HR084_11540) fdxA 2302132..2302380 (+) 249 WP_003225461.1 ferredoxin -
  HR084_RS11545 (HR084_11545) fmnP 2302420..2302992 (-) 573 WP_038429219.1 riboflavin transporter FmnP -
  HR084_RS11550 (HR084_11550) serA 2303489..2305066 (+) 1578 WP_038429220.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56556.15 Da        Isoelectric Point: 6.5044

>NTDB_id=397832 HR084_RS11530 WP_038429218.1 2299325..2300815(-) (recS) [Bacillus subtilis strain JCL16]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGRPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAVDTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=397832 HR084_RS11530 WP_038429218.1 2299325..2300815(-) (recS) [Bacillus subtilis strain JCL16]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCGCCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGTGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGTGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994

Multiple sequence alignment