Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   HR084_RS08055 Genome accession   NZ_CP054177
Coordinates   1546739..1547188 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain JCL16     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541739..1552188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS08015 (HR084_08015) ctaE 1541756..1542379 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  HR084_RS08020 (HR084_08020) ctaF 1542382..1542714 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  HR084_RS08025 (HR084_08025) ctaG 1542741..1543634 (+) 894 WP_015252153.1 cytochrome c oxidase assembly factor CtaG -
  HR084_RS08030 (HR084_08030) ylbA 1543666..1544028 (-) 363 WP_003232238.1 YugN family protein -
  HR084_RS08035 (HR084_08035) ylbB 1544168..1544614 (+) 447 WP_003221362.1 CBS domain-containing protein -
  HR084_RS08040 (HR084_08040) ylbC 1544698..1545738 (+) 1041 WP_173614065.1 CAP domain-containing protein -
  HR084_RS08045 (HR084_08045) ylbD 1545970..1546368 (+) 399 WP_003232233.1 YlbD family protein -
  HR084_RS08050 (HR084_08050) ylbE 1546384..1546623 (+) 240 WP_003232231.1 YlbE-like family protein -
  HR084_RS08055 (HR084_08055) ylbF 1546739..1547188 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  HR084_RS08060 (HR084_08060) ylbG 1547243..1547515 (+) 273 WP_015715839.1 YlbG family protein -
  HR084_RS08065 (HR084_08065) rsmD 1547838..1548392 (+) 555 WP_160221559.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HR084_RS08070 (HR084_08070) coaD 1548397..1548882 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  HR084_RS08075 (HR084_08075) spoVV 1548893..1550119 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  HR084_RS08080 (HR084_08080) ylbK 1550300..1551082 (+) 783 WP_003232221.1 patatin family protein -
  HR084_RS08085 (HR084_08085) sepM 1551084..1552109 (+) 1026 WP_173614066.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=397811 HR084_RS08055 WP_003221370.1 1546739..1547188(+) (ylbF) [Bacillus subtilis strain JCL16]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=397811 HR084_RS08055 WP_003221370.1 1546739..1547188(+) (ylbF) [Bacillus subtilis strain JCL16]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment