Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BSN5_RS11630 Genome accession   NC_014976
Coordinates   2215452..2216564 (+) Length   370 a.a.
NCBI ID   WP_015715082.1    Uniprot ID   A0A8E0S8Z1
Organism   Bacillus subtilis BSn5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2210452..2221564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS11605 (BSn5_11550) rnpA 2211162..2211512 (-) 351 WP_003242628.1 ribonuclease P protein component -
  BSN5_RS11610 (BSn5_11555) rpmH 2211664..2211798 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  BSN5_RS11615 (BSn5_11560) dnaA 2212425..2213765 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  BSN5_RS11620 (BSn5_11565) dnaN 2213954..2215090 (+) 1137 WP_003226811.1 DNA polymerase III subunit beta -
  BSN5_RS11625 (BSn5_11570) rlbA 2215221..2215436 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  BSN5_RS11630 (BSn5_11575) recF 2215452..2216564 (+) 1113 WP_015715082.1 DNA replication/repair protein RecF Machinery gene
  BSN5_RS11635 (BSn5_11580) remB 2216582..2216827 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  BSN5_RS11640 (BSn5_11585) gyrB 2216882..2218798 (+) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BSN5_RS11645 (BSn5_11590) gyrA 2219009..2221474 (+) 2466 WP_014475555.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42318.37 Da        Isoelectric Point: 7.3661

>NTDB_id=39776 BSN5_RS11630 WP_015715082.1 2215452..2216564(+) (recF) [Bacillus subtilis BSn5]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLELSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=39776 BSN5_RS11630 WP_015715082.1 2215452..2216564(+) (recF) [Bacillus subtilis BSn5]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTTGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTATCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGAGTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.73

100

0.997

Multiple sequence alignment