Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GII86_RS08030 Genome accession   NZ_CP045816
Coordinates   1523367..1523942 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1518367..1528942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS08000 (GII86_08000) dapD 1518555..1519265 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GII86_RS08005 (GII86_08005) dapI 1519335..1520459 (+) 1125 WP_043857415.1 N-acetyldiaminopimelate deacetylase -
  GII86_RS08010 (GII86_08010) ykuS 1520521..1520766 (+) 246 WP_003232382.1 YkuS family protein -
  GII86_RS08015 (GII86_08015) mscT 1520803..1521606 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  GII86_RS08020 (GII86_08020) ahpA 1521843..1522385 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  GII86_RS08025 (GII86_08025) ykuV 1522455..1522901 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  GII86_RS08030 (GII86_08030) rok 1523367..1523942 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  GII86_RS08035 (GII86_08035) cse15 1523983..1524948 (-) 966 WP_046160341.1 spore protein Cse15 -
  GII86_RS08040 (GII86_08040) mobA 1525085..1525684 (+) 600 WP_046160342.1 molybdenum cofactor guanylyltransferase -
  GII86_RS08045 (GII86_08045) moeB 1525735..1526754 (+) 1020 WP_046160343.1 molybdopterin-synthase adenylyltransferase MoeB -
  GII86_RS08050 (GII86_08050) glp 1526772..1528064 (+) 1293 WP_046160344.1 gephyrin-like molybdotransferase Glp -
  GII86_RS08055 (GII86_08055) mobB 1528025..1528546 (+) 522 WP_046160345.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=397652 GII86_RS08030 WP_003232378.1 1523367..1523942(+) (rok) [Bacillus subtilis strain P5_B2]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=397652 GII86_RS08030 WP_003232378.1 1523367..1523942(+) (rok) [Bacillus subtilis strain P5_B2]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment