Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FOC73_RS07975 Genome accession   NZ_CP053998
Coordinates   1644450..1646186 (+) Length   578 a.a.
NCBI ID   WP_002885969.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1639450..1651186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS07950 (FOC73_07950) - 1639834..1641087 (+) 1254 WP_002885915.1 efflux RND transporter periplasmic adaptor subunit -
  FOC73_RS07955 (FOC73_07955) - 1641080..1641784 (+) 705 WP_002886155.1 ABC transporter ATP-binding protein -
  FOC73_RS07960 (FOC73_07960) - 1641794..1643002 (+) 1209 WP_002886072.1 ABC transporter permease -
  FOC73_RS07965 (FOC73_07965) rplJ 1643294..1643797 (+) 504 WP_002886041.1 50S ribosomal protein L10 -
  FOC73_RS07970 (FOC73_07970) rplL 1643873..1644241 (+) 369 WP_002886110.1 50S ribosomal protein L7/L12 -
  FOC73_RS07975 (FOC73_07975) rcrP 1644450..1646186 (+) 1737 WP_002885969.1 ABC transporter ATP-binding protein Regulator
  FOC73_RS07980 (FOC73_07980) rcrQ 1646199..1647986 (+) 1788 WP_002886124.1 ABC transporter ATP-binding protein Regulator
  FOC73_RS07985 (FOC73_07985) queA 1648084..1649127 (-) 1044 WP_002886029.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FOC73_RS07990 (FOC73_07990) - 1649278..1649979 (+) 702 WP_002885948.1 glucosamine-6-phosphate deaminase -
  FOC73_RS07995 (FOC73_07995) - 1650169..1651152 (+) 984 WP_002886090.1 rhodanese-related sulfurtransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64863.79 Da        Isoelectric Point: 5.5902

>NTDB_id=396947 FOC73_RS07975 WP_002885969.1 1644450..1646186(+) (rcrP) [Streptococcus salivarius strain FDAARGOS_771]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLSYAVSKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFAEQILKMGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIDSKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=396947 FOC73_RS07975 WP_002885969.1 1644450..1646186(+) (rcrP) [Streptococcus salivarius strain FDAARGOS_771]
ATGGCTTATATTTGGTCTTATCTCAGGCGTTATCCTAAGTGGCTAGCAATGAATTTTACGGCGGCCATTTTGTTTGTTAT
TGCTAACCTGGGTCTGCCGACGGTTCTTGCCAGAATGATTGATGAGGGAATAAACCGTGGAGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTCGGTGTGGTCTTGACTGGGATTGTTGGTCGTGTGCTCTTGTCCTATGCGGTTAGTAAGTTG
ACGACCACAATGGTGCAGGTCATGCGTAATGACATTTACGCTAAGCTTCAGGAGTATTCCCACCATGAGTACGAGCAGAT
TGGGGTATCCTCTTTGGTAACTCGTATTACATCTGATGCTTTTGTTCTCATGCAATTTGCAGAACAGATTCTTAAGATGG
GTGTCATTACTCCTCTGATGATGGTTTCCAGTGTCTTCTTAATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATTTCCTTGCCTTTCCTAGCCGTAGTAGTCTGGTATGTAGCGGTAAAAACGCGTCCGCTTTCTGAGAAACAACAGGCAAC
TCTCGACAAGATTAACCAGTACGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGAGCTTTCGCCAGAGAAGATTTTC
AAGAGAAGAAGTTTGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAACAAGCTCTTTAAATTAACTGGTTTGACAGAA
CCCCTTTTTGTGCAAATCATCATCGCCATGATTGTGGCTATTGTTTGGTTTGCCCTCGAGCCTTTAGGTTCTGGGACTTT
GGCAATCGGGGATTTGGTTGCCTTTATTGAGTACAGTTTCCATGCGCTATTGTCTTTCCTTTTCCTAGCTAACCTCTTTA
CCATGTATCCTCGTACGGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGACATGCCTATTTCTATCAATCCAAATGAA
GACGGGGTGACAGAGACTGAGACTAAGGGATATTTGGAGTTTGACAATGTGACTTTTGCCTATCCTGGTGAAACTGAAAG
TCCTGTCCTACACAATATTTCTTTCAAGGCTAAACCCGGTGAAACCATTGCCTTTATCGGATCTACGGGTTCAGGAAAAT
CATCACTTGTGCAGTTGATTCCACGCTTTTATGATGTAACACTTGGACGCATTCTTGTTGATGGTGTGGATGTCCGTGAC
TATAATCTGAAGGCTCTGCGTCGTAAGATTGGCTTTATTCCACAAAAAGCCCTGCTCTTTACAGGAACCATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCTACGGATGTGGCTCAAGCCAAGGAATTTATCG
ACAGTAAGGAAGAACGCTACGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCTGTGGTTAAACGTCCTGATCTTTACATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTGAAAGAAGTGACCCAGGATGCGACAGTCTTGATTGTGGCTCAACGTGTGGGGACTATCATGG
ATGCAGACCAGATTATCGTTCTTGATAAGGGTGAAATCGTGGGTCGTGGCCGCCACGAAGAGCTTATGGAAAGCAATGAG
ATTTACCGTGAAATTGCCAATTCTCAATTGAATCAAAAGAGTCTTACGGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.15

92.215

0.37