Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   HQN50_RS10550 Genome accession   NZ_CP053922
Coordinates   2239900..2240256 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain YD001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2234900..2245256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS10525 fabF 2235112..2236356 (+) 1245 WP_023088199.1 beta-ketoacyl-ACP synthase II -
  HQN50_RS10530 pabC 2236356..2237171 (+) 816 WP_003452483.1 aminodeoxychorismate lyase -
  HQN50_RS10535 mltG 2237177..2238226 (+) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  HQN50_RS10540 tmk 2238255..2238887 (+) 633 WP_003091125.1 dTMP kinase -
  HQN50_RS10545 - 2238880..2239866 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  HQN50_RS10550 pilZ 2239900..2240256 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  HQN50_RS10555 - 2240271..2241047 (+) 777 WP_003091117.1 TatD family hydrolase -
  HQN50_RS10560 - 2241273..2242406 (-) 1134 WP_003118082.1 aminotransferase class V-fold PLP-dependent enzyme -
  HQN50_RS10565 - 2242492..2243130 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  HQN50_RS10570 - 2243297..2244193 (+) 897 WP_003119811.1 radical SAM protein -
  HQN50_RS10575 - 2244258..2244890 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=396777 HQN50_RS10550 WP_003091119.1 2239900..2240256(+) (pilZ) [Pseudomonas aeruginosa strain YD001]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=396777 HQN50_RS10550 WP_003091119.1 2239900..2240256(+) (pilZ) [Pseudomonas aeruginosa strain YD001]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449