Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HPT07_RS04335 Genome accession   NZ_CP053917
Coordinates   866863..867192 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PSE6684     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 861863..872192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT07_RS04320 (HPT07_04320) uvrB 863250..865262 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  HPT07_RS04325 (HPT07_04325) - 865450..866646 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  HPT07_RS04335 (HPT07_04335) comEA/comE1 866863..867192 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  HPT07_RS04340 (HPT07_04340) - 867383..869380 (-) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  HPT07_RS04345 (HPT07_04345) - 869393..870418 (-) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  HPT07_RS04350 (HPT07_04350) - 870519..871463 (-) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=396663 HPT07_RS04335 WP_003091430.1 866863..867192(-) (comEA/comE1) [Pseudomonas aeruginosa strain PSE6684]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=396663 HPT07_RS04335 WP_003091430.1 866863..867192(-) (comEA/comE1) [Pseudomonas aeruginosa strain PSE6684]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385