Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GFB47_RS06420 Genome accession   NZ_CP045699
Coordinates   1389216..1389809 (-) Length   197 a.a.
NCBI ID   WP_153448167.1    Uniprot ID   A0A5Q0TGK6
Organism   Vibrio algicola strain SM1977     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384216..1394809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB47_RS06405 (GFB47_06395) serC 1385652..1386734 (-) 1083 WP_153447228.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  GFB47_RS06410 (GFB47_06400) - 1386924..1388189 (-) 1266 WP_178306456.1 DUF945 family protein -
  GFB47_RS06415 (GFB47_06405) - 1388535..1389092 (+) 558 WP_153447230.1 hypothetical protein -
  GFB47_RS06420 (GFB47_06410) tfoX 1389216..1389809 (-) 594 WP_153448167.1 TfoX/Sxy family DNA transformation protein Regulator
  GFB47_RS06425 (GFB47_06415) - 1390291..1391196 (+) 906 WP_153447231.1 lysine exporter LysO family protein -
  GFB47_RS06430 (GFB47_06420) - 1391390..1391917 (+) 528 WP_153448168.1 hypothetical protein -
  GFB47_RS06435 (GFB47_06425) panP 1392077..1393735 (+) 1659 WP_153447232.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22394.72 Da        Isoelectric Point: 9.3535

>NTDB_id=396075 GFB47_RS06420 WP_153448167.1 1389216..1389809(-) (tfoX) [Vibrio algicola strain SM1977]
MGTSMELDFFKYVAKFGSFQKRSMFGGVGLFSDDAMYALISGNIIFIRGGGDLDDFLKTKGCKRYKHIKKQTVATVNYFD
ITDVFTNRDECLDDLINTSINHSKQERAFQKSAESKRLRDLPNMQLTLERMVKKAGIPDVGTFLNLGPEDVFQRVKATYG
GDVDIRLLWKFAGAADGCHWKLLQEPRKQQLLSNVHH

Nucleotide


Download         Length: 594 bp        

>NTDB_id=396075 GFB47_RS06420 WP_153448167.1 1389216..1389809(-) (tfoX) [Vibrio algicola strain SM1977]
ATGGGCACTAGCATGGAGCTGGACTTTTTTAAATATGTAGCTAAATTTGGTTCTTTTCAGAAGCGATCAATGTTTGGCGG
TGTTGGGTTATTTAGTGATGATGCGATGTATGCATTAATTTCGGGCAATATCATTTTCATTCGTGGTGGCGGTGATTTAG
ATGACTTTCTAAAGACCAAAGGGTGTAAACGCTACAAACACATTAAAAAACAAACCGTTGCAACGGTTAATTATTTTGAT
ATTACAGATGTATTTACTAATAGAGATGAATGTTTAGACGATTTAATTAACACATCAATTAATCACTCTAAACAAGAAAG
GGCTTTTCAAAAGTCAGCAGAAAGCAAACGACTGCGTGATTTACCTAATATGCAACTCACCTTAGAGCGCATGGTGAAAA
AAGCTGGGATCCCGGATGTTGGAACCTTTTTAAATCTTGGCCCTGAAGATGTATTTCAACGAGTGAAAGCAACTTACGGT
GGTGATGTTGATATTCGTCTATTGTGGAAATTTGCAGGTGCTGCAGATGGTTGTCATTGGAAACTTCTTCAAGAACCTAG
AAAACAACAACTTTTATCCAATGTACACCATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(115-194)

TfoX N-terminal domain (TfoX_N)

(12-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0TGK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

64.865

93.909

0.609
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

61.458

97.462

0.599
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

61.458

97.462

0.599
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

61.458

97.462

0.599
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

61.458

97.462

0.599
  tfoX Vibrio cholerae strain A1552

61.458

97.462

0.599
  tfoX Vibrio campbellii strain DS40M4

62.703

93.909

0.589
  tfoX Aliivibrio fischeri ES114

56.995

97.97

0.558

Multiple sequence alignment