Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GFH30_RS12280 Genome accession   NZ_CP045650
Coordinates   2564194..2565687 (+) Length   497 a.a.
NCBI ID   WP_153372998.1    Uniprot ID   A0A5Q0P665
Organism   Acinetobacter wanghuae strain dk386     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2559194..2570687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH30_RS12255 (GFH30_12250) ribD 2560119..2561207 (-) 1089 WP_153372991.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  GFH30_RS12260 (GFH30_12255) nrdR 2561210..2561674 (-) 465 WP_153372993.1 transcriptional regulator NrdR -
  GFH30_RS12265 (GFH30_12260) - 2561814..2563226 (-) 1413 WP_153372994.1 ammonium transporter -
  GFH30_RS12270 (GFH30_12265) glnK 2563286..2563624 (-) 339 WP_005094485.1 P-II family nitrogen regulator -
  GFH30_RS12275 (GFH30_12270) - 2563901..2564128 (+) 228 WP_153372996.1 accessory factor UbiK family protein -
  GFH30_RS12280 (GFH30_12275) comM 2564194..2565687 (+) 1494 WP_153372998.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GFH30_RS12285 (GFH30_12280) - 2565730..2566470 (-) 741 WP_153373000.1 TorF family putative porin -
  GFH30_RS12290 (GFH30_12285) - 2567206..2568522 (+) 1317 WP_153373002.1 OprD family outer membrane porin -
  GFH30_RS12295 (GFH30_12290) ppa 2568615..2569151 (-) 537 WP_106983845.1 inorganic diphosphatase -
  GFH30_RS12300 (GFH30_12295) - 2569267..2569671 (-) 405 WP_153373004.1 MAPEG family protein -
  GFH30_RS12305 (GFH30_12300) - 2569770..2570150 (+) 381 WP_153373006.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 54625.87 Da        Isoelectric Point: 7.5407

>NTDB_id=395930 GFH30_RS12280 WP_153372998.1 2564194..2565687(+) (comM) [Acinetobacter wanghuae strain dk386]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLAEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIATGQLPEHCTDGLEFVGELALDGQLRPVTGVLSIAIACQQQQHTLILPSPNAQEACQLPNFQVFGANHL
KEVCEHLAESKKLPQFQPQEAMTEQQYKYDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSIANAQHPFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNNDVRCQCSPEMIKRYQSRISGPLLDRIDLHIDVPPLAAKELQNSQAVE
NSATVRERVITAYERQMKRQNALNMSLSPKQLEQYALLDDTTTLMFEMAQQKLDLSARAYHRVLRVARTIADLAQSPDIQ
SVHLSEALSYRSQISQL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=395930 GFH30_RS12280 WP_153372998.1 2564194..2565687(+) (comM) [Acinetobacter wanghuae strain dk386]
ATGTCTTTTGCCAAAATTCACACCCGAGGTTTACTCGGGTTACATGCCCCACTGATTGAAGTTGAAGTGCATGTCAGTCA
AGGTATGCCTTCACTTACCATTGTCGGTTTAGCCGAAGCTGCTGTTCGTGAAAGTAAAGATCGAGTTCGCTCTGCCATTT
TAAACAGTGGTTTTCAATTTCCGACCAAACGTTTAACCATTAATTTAGCCCCTGCCGACCTCCCCAAAGATGGTTCAAGA
CTCGATTTACCAATTGCACTAGGAATATTGATTGCAACGGGTCAATTGCCTGAGCATTGTACTGATGGTTTAGAGTTTGT
TGGTGAATTGGCTTTAGATGGTCAACTTCGTCCTGTCACAGGTGTACTCAGTATCGCGATTGCCTGTCAGCAACAACAGC
ACACCTTAATTCTACCAAGTCCCAATGCTCAAGAAGCCTGCCAACTGCCTAACTTCCAAGTCTTTGGTGCCAACCATTTA
AAAGAAGTCTGTGAACATTTGGCGGAATCTAAAAAATTACCGCAATTTCAGCCGCAAGAAGCGATGACTGAACAACAGTA
CAAATATGATTTAGCCGATGTGAAAGGTCAATTACGCCCAAGACGTGCATTAGAAATTGCTGCCGCAGGTGGGCATTCTT
TATTGTTTAAGGGGCCTCCGGGCACAGGCAAAACCCTGCTTGCTTCACGATTAGCCAGTATTTTGCCACCACTCAACACG
CAAGAAAACTTAGAAGTTGCCAGTATTTATTCTATTGCCAATGCTCAGCATCCGTTCGGACAACGCCCCTTTCGGGCACC
ACATCACACTGCATCTGCGATTGCTTTAGTGGGTGGAGGATCACATCCGAAACCGGGTGAAATTACCTTGGCACATTTAG
GTGTTTTATTTTTGGATGAGCTGCCAGAGTTTGATCGTAAAGTATTAGAAGTTCTGAGACAGCCACTTGAGTCTAAAGAG
ATCGTGATTTCACGCGCTTCACGGCAAATCACCTTTCCTGCCAATTTTCAATTGATTGCAGCCATGAACCCCTGTCCTTG
TGGCTATGCTTTTAACAATGATGTGCGTTGCCAATGTTCACCTGAGATGATCAAGCGATATCAAAGCCGAATTTCTGGCC
CGCTCTTGGATCGAATAGATTTGCACATTGACGTACCGCCCTTAGCGGCAAAAGAGCTACAGAACAGCCAAGCCGTTGAA
AATTCAGCGACTGTTCGTGAACGTGTGATTACAGCTTATGAACGACAAATGAAGCGGCAGAATGCGTTAAACATGAGTTT
AAGTCCAAAACAGCTTGAGCAATATGCCCTCCTTGATGACACAACGACTCTCATGTTTGAAATGGCACAGCAAAAATTAG
ACTTATCAGCACGTGCATACCATCGGGTATTGCGTGTGGCACGGACCATTGCCGATTTAGCACAGAGTCCAGATATTCAA
AGTGTACATTTATCAGAAGCACTTTCGTATCGAAGTCAAATATCGCAGCTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0P665

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50.888

100

0.519
  comM Vibrio cholerae strain A1552

51.21

99.799

0.511
  comM Glaesserella parasuis strain SC1401

50.8

100

0.511
  comM Vibrio campbellii strain DS40M4

50.806

99.799

0.507
  comM Legionella pneumophila str. Paris

49.9

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.257

100

0.461

Multiple sequence alignment