Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DLI71_RS12425 Genome accession   NZ_CP045528
Coordinates   2563998..2564816 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 6507     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2558998..2569816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLI71_RS12410 (DLI71_12410) pilE 2559215..2559640 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  DLI71_RS12415 (DLI71_12415) pilY2 2559637..2560119 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  DLI71_RS12420 (DLI71_12420) pilY1 2560132..2563986 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  DLI71_RS12425 (DLI71_12425) pilX 2563998..2564816 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DLI71_RS12430 (DLI71_12430) pilW 2564813..2565814 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  DLI71_RS12435 (DLI71_12435) pilV 2565815..2566375 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  DLI71_RS12440 (DLI71_12440) fimU 2566369..2566842 (-) 474 WP_100783490.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DLI71_RS12445 (DLI71_12445) ispH 2567012..2567962 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DLI71_RS12450 (DLI71_12450) gmk 2568085..2568714 (+) 630 WP_000015937.1 guanylate kinase -
  DLI71_RS12455 (DLI71_12455) rpoZ 2568787..2569065 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DLI71_RS12460 (DLI71_12460) - 2569104..2569233 (+) 130 Protein_2468 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=394882 DLI71_RS12425 WP_000149374.1 2563998..2564816(-) (pilX) [Acinetobacter baumannii strain 6507]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=394882 DLI71_RS12425 WP_000149374.1 2563998..2564816(-) (pilX) [Acinetobacter baumannii strain 6507]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment