Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   GE021_RS03830 Genome accession   NZ_CP053792
Coordinates   768840..772472 (+) Length   1210 a.a.
NCBI ID   WP_125073785.1    Uniprot ID   A0A3P5Y738
Organism   Streptococcus canis strain HL_77_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 763840..777472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS03815 (GE021_003815) - 764538..765442 (-) 905 Protein_720 neutral zinc metallopeptidase -
  GE021_RS03825 (GE021_003825) rexB 765619..768843 (+) 3225 WP_125073786.1 ATP-dependent nuclease subunit B Machinery gene
  GE021_RS03830 (GE021_003830) rexA 768840..772472 (+) 3633 WP_125073785.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GE021_RS03835 (GE021_003835) - 772610..773725 (+) 1116 WP_125073784.1 aminotransferase -
  GE021_RS03840 (GE021_003840) - 773793..774605 (+) 813 WP_125073783.1 transporter substrate-binding domain-containing protein -
  GE021_RS03845 (GE021_003845) rpsU 774707..774883 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  GE021_RS03850 (GE021_003850) mscL 775201..775575 (-) 375 WP_003047993.1 large conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 1210 a.a.        Molecular weight: 138143.46 Da        Isoelectric Point: 5.3089

>NTDB_id=394609 GE021_RS03830 WP_125073785.1 768840..772472(+) (rexA) [Streptococcus canis strain HL_77_1]
MITFEPFLSPEAIAQLQETESRSQAVQKRTPQQIEAIYSSGQNILVSASAGSGKTFVMVERILDKILRGVAIDRLFISTF
TVKAATELRDRIEKKLYAQIAQTTDYQLKAYLTEQLQTLSQADIGTMDAFAQKLVNHYGYSIGLSPRFRIMQDKAEQDIL
KQDVFSKLFETFMAQSDSSLFKALVKNFSGNRKDASAFRDLIYSCYSFSQSTENPREWLQETFLKAAKTYQHLEDMPLQD
IDLLLSCMHDTADQLRDLTDMEEYGQLTKAGKPTVKYINHLKVIENLHHWARDFDHLYGRQGIGQLAKDLTTMLPSGNDV
IVAGTKYPIFKALHQKLTRFRHLETILAYQGESLPLLEVLQRFVIAFSDAYLAAKMQEAAFEFTDIAHFAIQILEENPDI
RQTYQQQYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDMKQSIYRFRQADPQIFNQKFKDYQAHPEQGKLILLKENF
RSQSEVLDASNAVFSHLMDESLGDILYDGQHQLVAGSDAQKVSYPEHRAKLLLYNTDRNDEVEEEDSDGLSPNEVNIVAK
EIIRLHNDQGVPFEDITLLVSSRTRNDAIFHAFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRS
PMFAFDEDELARLALQKGSDQDTACLYDKLEKALLGTGAHSDLVHDELMAKLSGFMETLKNWRRYAKIKSLHDLIWKIFN
DRFYFDLVASQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETKNDLADVEVTSPKQAVNLMTIHKSKGLE
FQYVFILNCDKRFAMTDVRAPFILNRQQGIGIKYLADVKELLGEETLASVKVSMETLPYQLNQQELRLATLSEQMRLLYV
AMTRAEKQLFLVGKASKQKSQELTDGKHTGKLLPLALREQLMTFQDWLLAITDTFTTEDLCFDVCFIEDSDLSPEVIGQL
QKPQVLHPDNLKDNRQSADIVRALDMLDKVSQLNADYEAAINLPTVRTPSQLKASYEPLLDSEGVEVMEKTYHTSTAFTL
PDFSKQVRVDASQVGSALHQLMQAIPLAYPVTAKTIAHALEQLELDQAVKAALDMVKVEQFFDQTVLGQQFQTYHRNLYR
EAPFAMLKTDPISQEDYVVRGIIDAFLLFEDHIELVDYKTDKYQNSLELKNRYQQQLTLYAEALTQTYGLPVTKKYLVLM
GGKKLEIVNI

Nucleotide


Download         Length: 3633 bp        

>NTDB_id=394609 GE021_RS03830 WP_125073785.1 768840..772472(+) (rexA) [Streptococcus canis strain HL_77_1]
GTGATAACATTTGAACCCTTTTTAAGCCCAGAAGCTATTGCTCAATTACAAGAAACAGAAAGCCGTAGTCAAGCAGTTCA
AAAAAGAACCCCCCAGCAGATTGAAGCCATATACAGTAGCGGTCAAAATATCCTTGTGTCAGCCTCTGCTGGGTCAGGGA
AAACCTTTGTGATGGTAGAACGCATTCTTGATAAGATCCTGAGAGGAGTTGCTATTGATCGGTTGTTTATTTCCACTTTT
ACCGTTAAGGCAGCTACGGAATTGCGTGACCGTATTGAGAAAAAATTGTATGCTCAAATCGCTCAAACGACAGATTATCA
GCTAAAAGCCTACCTAACAGAGCAGCTGCAGACCCTGTCTCAGGCAGATATTGGTACCATGGATGCCTTTGCCCAAAAGT
TGGTCAATCACTATGGTTATAGCATTGGTTTGTCGCCTCGATTTCGCATTATGCAAGATAAGGCCGAGCAAGATATTTTA
AAACAGGACGTTTTTAGTAAGCTATTTGAAACCTTTATGGCACAAAGTGATTCTTCTTTGTTCAAAGCACTGGTTAAAAA
TTTTTCTGGTAACCGAAAAGATGCATCCGCTTTTAGAGACCTGATTTATAGCTGTTATTCTTTTAGCCAATCTACCGAAA
ACCCAAGAGAATGGTTGCAAGAAACGTTCTTAAAAGCAGCAAAAACCTATCAGCACCTTGAAGATATGCCTCTGCAAGAC
ATTGACTTGTTGTTGTCTTGCATGCATGATACCGCAGATCAGTTAAGAGATTTGACTGACATGGAAGAATATGGTCAACT
GACCAAAGCTGGTAAACCAACGGTCAAATATATTAACCATCTAAAGGTTATTGAAAATCTTCATCATTGGGCGCGGGATT
TTGACCATCTCTATGGTAGGCAAGGAATTGGCCAATTGGCTAAAGACTTGACCACAATGCTCCCTTCTGGCAATGACGTG
ATTGTTGCTGGTACCAAGTATCCTATTTTTAAAGCCTTACACCAAAAATTAACACGCTTTAGACACTTAGAGACGATTTT
GGCATACCAAGGGGAAAGTCTTCCCTTGTTGGAAGTGTTGCAACGTTTTGTCATAGCCTTTTCAGATGCATATCTGGCCG
CCAAGATGCAAGAAGCAGCCTTTGAATTTACAGATATTGCTCATTTTGCCATTCAGATTTTAGAAGAAAACCCTGACATC
AGACAGACCTACCAGCAGCAGTATCACGAAGTCATGGTTGATGAATACCAAGATAACAACCACATGCAGGAGCGCTTATT
AACTTTATTATCAAATGGCCATAATCGTTTCATGGTTGGTGATATGAAGCAATCCATTTACCGATTTCGACAAGCAGATC
CTCAAATTTTCAATCAGAAATTCAAAGACTATCAGGCTCATCCTGAGCAAGGGAAGCTTATTTTACTGAAAGAAAATTTC
CGAAGCCAATCCGAAGTTTTGGATGCCAGTAATGCTGTTTTTAGCCATTTGATGGATGAATCTCTGGGAGACATTTTATA
CGATGGGCAACATCAGTTGGTTGCTGGTAGCGATGCCCAAAAAGTGTCCTATCCTGAACATCGTGCTAAATTATTGCTTT
ATAACACTGACCGAAATGACGAAGTAGAAGAGGAAGATTCTGATGGCTTATCACCTAATGAGGTGAATATTGTTGCCAAA
GAAATCATCCGATTGCATAATGACCAAGGAGTACCTTTTGAAGACATCACCCTTCTTGTCTCATCAAGGACAAGAAATGA
TGCTATTTTTCATGCCTTTAACCAGTATGGTATCCCACTAGTAGCTGACGGTGGTCAGCAAAATTACCTCAAATCGGTTG
AAGTCATGGTCATGTTGGATACCTTGAGAACCATTAATAACCCAAGGAATGATTATGCCCTTGTCGCCCTGTTGCGCTCA
CCAATGTTTGCCTTTGATGAGGACGAATTAGCAAGACTGGCGCTTCAAAAAGGCAGTGACCAAGATACTGCTTGTCTTTA
TGACAAATTGGAAAAGGCCTTACTTGGAACGGGTGCTCACTCAGACTTAGTGCATGATGAGTTAATGGCAAAATTAAGTG
GGTTTATGGAAACCTTAAAGAATTGGCGTCGCTATGCTAAAATCAAATCTTTGCACGACCTCATTTGGAAAATTTTCAAT
GATCGGTTTTACTTCGATCTGGTTGCTAGTCAAGCCAAGGCTGAGCAGGCCCAAGCCAATCTTTATGCGCTAGCTCTGCG
TGCCAATCAATTTGAGCAATCAGGATACAAAGGGTTATCTCGCTTTATTGGTATGATTGACAAGGTGTTAGAAACGAAAA
ATGATTTAGCAGACGTTGAAGTAACTAGCCCTAAGCAAGCGGTCAATCTCATGACGATTCACAAATCCAAGGGATTGGAA
TTCCAGTACGTGTTTATCCTTAACTGTGACAAACGCTTTGCCATGACAGATGTTCGTGCTCCGTTTATTTTAAATCGTCA
GCAGGGTATTGGAATCAAGTACTTGGCTGATGTTAAGGAGCTTTTGGGTGAAGAAACCTTAGCGTCAGTCAAAGTGAGTA
TGGAAACCTTGCCTTATCAGTTGAATCAGCAGGAGTTACGCTTGGCAACCTTATCTGAACAAATGCGGCTGTTGTACGTT
GCCATGACACGAGCTGAGAAACAACTTTTCCTTGTTGGAAAAGCCAGCAAGCAAAAAAGCCAAGAGTTGACAGATGGTAA
GCATACTGGTAAGTTGTTGCCTTTAGCGCTTCGAGAACAGCTGATGACTTTCCAAGACTGGCTCTTGGCTATCACAGATA
CCTTCACCACTGAAGACCTTTGTTTTGATGTGTGCTTTATTGAGGATAGCGACCTAAGTCCAGAGGTTATTGGTCAACTT
CAAAAACCACAAGTATTACATCCAGACAACCTCAAGGATAACCGCCAATCTGCGGACATTGTGCGTGCCTTAGATATGCT
AGACAAAGTGTCTCAATTAAATGCTGACTATGAAGCCGCCATCAATCTCCCAACAGTTCGCACGCCTAGCCAATTAAAGG
CTTCCTATGAGCCCTTGTTAGACTCAGAGGGGGTAGAGGTCATGGAAAAAACTTACCACACCTCTACAGCCTTTACCTTA
CCTGATTTTTCAAAACAGGTCAGAGTTGACGCTAGCCAAGTTGGGTCAGCCCTCCACCAATTGATGCAGGCCATTCCCTT
GGCTTATCCAGTAACAGCCAAAACAATCGCACATGCTCTAGAGCAACTAGAGTTGGACCAAGCGGTTAAGGCAGCTCTTG
ATATGGTGAAAGTTGAGCAATTCTTTGATCAGACAGTCTTGGGGCAGCAATTTCAGACCTATCACAGGAATTTGTACAGA
GAAGCGCCTTTTGCCATGTTAAAAACAGATCCTATTAGTCAAGAAGACTATGTTGTTCGGGGAATCATTGATGCTTTTCT
CTTATTTGAGGATCATATTGAACTAGTGGATTATAAAACGGATAAATACCAAAATTCTTTGGAGTTAAAAAACCGTTACC
AACAACAGTTGACTTTATATGCAGAAGCCCTTACTCAGACCTATGGTCTTCCTGTAACCAAGAAATATTTGGTTCTAATG
GGAGGCAAAAAATTGGAAATTGTCAATATCTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(474-892)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(30-465)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5Y738

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.018

71.653

0.373

Multiple sequence alignment