Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   GE022_RS08275 Genome accession   NZ_CP053790
Coordinates   1690579..1691613 (-) Length   344 a.a.
NCBI ID   WP_164405093.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685579..1696613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS08240 (GE022_008230) - 1686363..1686665 (-) 303 WP_164405092.1 YlxQ-related RNA-binding protein -
  GE022_RS08245 (GE022_008235) rnpM 1686658..1686954 (-) 297 WP_003044945.1 RNase P modulator RnpM -
  GE022_RS08250 (GE022_008240) nusA 1686970..1688127 (-) 1158 WP_159304445.1 transcription termination factor NusA -
  GE022_RS08255 (GE022_008245) rimP 1688298..1688780 (-) 483 WP_164227950.1 ribosome maturation factor RimP -
  GE022_RS08265 (GE022_008255) trmB 1689098..1689733 (-) 636 WP_093999293.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GE022_RS08270 (GE022_008260) ccrZ 1689733..1690524 (-) 792 WP_003044956.1 cell cycle regulator CcrZ -
  GE022_RS08275 (GE022_008265) pptB 1690579..1691613 (-) 1035 WP_164405093.1 ABC transporter permease Regulator
  GE022_RS08280 (GE022_008270) pptA 1691616..1692341 (-) 726 WP_003044963.1 ABC transporter ATP-binding protein Regulator
  GE022_RS08285 (GE022_008275) - 1692413..1692832 (+) 420 WP_125074751.1 HIT family protein -
  GE022_RS08290 (GE022_008280) - 1692829..1693146 (+) 318 WP_164405094.1 chemotaxis protein -
  GE022_RS08295 (GE022_008285) brpA 1693195..1694466 (-) 1272 WP_125074154.1 biofilm formation/cell division transcriptional regulator BrpA -
  GE022_RS08300 (GE022_008290) - 1694475..1694999 (-) 525 WP_164405095.1 GNAT family N-acetyltransferase -
  GE022_RS08305 (GE022_008295) tsaE 1694992..1695435 (-) 444 WP_039994873.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39679.53 Da        Isoelectric Point: 10.1375

>NTDB_id=394541 GE022_RS08275 WP_164405093.1 1690579..1691613(-) (pptB) [Streptococcus canis strain HL_77_2]
MKALFLKRRQDFHKQQSKYLRYVFNDHFVLVLMFLLGFALVQYSQLLRQFPSNHLPVQACLVVLVLLLLNVGSVATYLEE
ADQHFLLPKEEEVVTHIKQAERSAFILWAGLQTAILAFLYPIFNRLGFSLVTFSLCLLVLVAVKKILLSRKVGRFLREEG
LDWEKAVAFENNRKQAILKFYSLFTSVKGISTKVKKRTYLNPLLKLVKEDAKNLWATLYLKAFLRSSDYLGLFLRLLLLS
SLSLLFITNAYLSVGLALVFNYLTLFQLLSLYHHYDYHYMTGLYPENNQGKKANLLAFLRGLSCLILVTNLLLCHSLEKA
LILVVVMGIVTLLYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=394541 GE022_RS08275 WP_164405093.1 1690579..1691613(-) (pptB) [Streptococcus canis strain HL_77_2]
ATGAAAGCATTATTTCTTAAACGCCGTCAGGATTTTCACAAACAACAAAGCAAGTATTTACGCTATGTCTTTAATGACCA
CTTTGTCTTGGTCTTGATGTTTTTGCTGGGCTTTGCTTTGGTGCAATACAGTCAATTATTGAGACAGTTCCCAAGCAATC
ACCTACCGGTTCAGGCCTGTCTAGTGGTATTGGTCTTATTATTACTCAATGTGGGGTCTGTGGCCACTTATTTAGAAGAA
GCTGATCAACATTTTCTCCTTCCTAAAGAAGAAGAGGTCGTTACTCATATCAAACAAGCTGAGCGTTCTGCTTTTATCCT
TTGGGCTGGTTTACAGACAGCTATTTTAGCTTTTTTGTATCCTATCTTCAATCGCTTAGGTTTCTCCCTAGTTACCTTTT
CTCTTTGCCTTTTGGTTTTAGTAGCGGTGAAAAAGATCCTTTTAAGTCGTAAAGTAGGCCGTTTTCTAAGAGAGGAGGGG
TTGGATTGGGAAAAAGCAGTCGCCTTTGAGAACAATCGTAAGCAGGCTATTTTGAAGTTTTATTCTCTTTTTACAAGTGT
TAAGGGAATTTCTACCAAGGTTAAGAAGCGAACCTACTTAAATCCTCTGTTAAAATTAGTTAAGGAAGATGCTAAAAACC
TCTGGGCAACGCTTTATCTGAAAGCTTTTTTGCGGAGCTCAGATTATTTAGGGCTATTTCTGAGGTTGTTGTTATTAAGC
TCGCTATCTTTGCTTTTTATTACCAATGCGTATTTATCGGTAGGCTTGGCGCTGGTCTTCAATTATTTGACTCTGTTCCA
ATTACTTTCTCTTTACCATCATTACGATTACCACTACATGACCGGCCTTTATCCTGAAAATAATCAAGGCAAGAAGGCAA
ATCTATTGGCTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTCACCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGTTGTTATGGGAATCGTTACGCTTCTCTACCTTCCTTATAAGTTAAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-326)

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

45.93

100

0.459
  pptB Streptococcus salivarius strain HSISS4

45.058

100

0.451