Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   GE022_RS07820 Genome accession   NZ_CP053790
Coordinates   1595689..1596354 (-) Length   221 a.a.
NCBI ID   WP_164405056.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1590689..1601354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS07810 (GE022_007800) - 1594055..1595009 (+) 955 Protein_1495 IS30 family transposase -
  GE022_RS07815 (GE022_007805) hpf 1595061..1595609 (-) 549 WP_093999503.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GE022_RS07820 (GE022_007810) comFC/cflB 1595689..1596354 (-) 666 WP_164405056.1 ComF family protein Machinery gene
  GE022_RS07825 (GE022_007815) comFA/cflA 1596326..1597651 (-) 1326 WP_164405057.1 DEAD/DEAH box helicase Machinery gene
  GE022_RS07830 (GE022_007820) - 1597707..1598339 (+) 633 WP_164405058.1 YigZ family protein -
  GE022_RS07835 (GE022_007825) cysK 1598457..1599392 (+) 936 WP_003044700.1 cysteine synthase A -
  GE022_RS07840 (GE022_007830) - 1599559..1599918 (-) 360 WP_003044703.1 S1 RNA-binding domain-containing protein -
  GE022_RS07845 (GE022_007835) - 1599918..1601318 (-) 1401 WP_164405059.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25570.42 Da        Isoelectric Point: 8.8885

>NTDB_id=394534 GE022_RS07820 WP_164405056.1 1595689..1596354(-) (comFC/cflB) [Streptococcus canis strain HL_77_2]
MTCLLCQQPSQLSLTITDILFLKRKSSYICHQCQQGFQKIGDAVCSTCCSPTHHVTCQDCLEWQKRGCNVNHKSLYHYNA
AMKAYFRQYKFQGDYLLRNVFAQELAEIIYQNYQGYVPVPVPISDKRYQERNFNQVSAILEAGKVRYHQIFEKHDDSRQS
SKTKKERLLTKNSYHLLEGVEIPPKILIVDDIYTTGSTIMALKKQLLQFGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=394534 GE022_RS07820 WP_164405056.1 1595689..1596354(-) (comFC/cflB) [Streptococcus canis strain HL_77_2]
ATGACATGTCTACTGTGCCAACAACCTAGTCAGCTATCATTAACAATCACAGATATTCTATTTCTAAAGCGCAAATCATC
CTATATTTGTCATCAGTGCCAACAAGGATTTCAAAAAATAGGTGACGCAGTTTGTTCAACTTGTTGTTCACCTACTCATC
ATGTAACCTGTCAAGATTGTTTGGAGTGGCAAAAAAGAGGCTGCAACGTTAATCACAAGAGTTTATATCATTATAATGCA
GCAATGAAAGCCTATTTCAGACAATATAAATTCCAAGGAGACTATTTATTAAGGAATGTCTTTGCTCAGGAATTAGCAGA
AATCATTTATCAGAACTATCAAGGATATGTCCCTGTCCCAGTACCTATAAGCGACAAACGTTACCAAGAACGGAATTTTA
ATCAGGTGAGTGCTATACTTGAAGCTGGTAAAGTTCGTTACCATCAAATTTTTGAAAAACATGATGATAGCCGTCAATCT
TCAAAGACGAAAAAGGAGCGCTTGTTGACTAAAAATTCTTATCATTTACTTGAAGGAGTCGAAATTCCCCCTAAAATCCT
CATTGTTGATGATATTTATACCACTGGTAGTACTATTATGGCTTTGAAAAAGCAGTTACTACAATTTGGAAATAGTGACA
TCAAAAGTTTGTCGATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

42.986

100

0.43
  comFC/cflB Streptococcus pneumoniae Rx1

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae D39

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae R6

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae TIGR4

42.534

100

0.425
  comFC/cflB Streptococcus mitis SK321

42.534

100

0.425