Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GER12_RS01070 Genome accession   NZ_CP045466
Coordinates   198409..199014 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Anatum strain Sal-3973     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 193409..204014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GER12_RS01055 (GER12_01080) helD 193626..195680 (-) 2055 WP_024155604.1 DNA helicase IV -
  GER12_RS01060 (GER12_01085) - 195804..196250 (+) 447 WP_023243628.1 YccF domain-containing protein -
  GER12_RS01065 (GER12_01090) yccS 196269..198422 (+) 2154 WP_000950869.1 YccS family putative transporter -
  GER12_RS01070 (GER12_01095) sxy/tfoX 198409..199014 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  GER12_RS01075 (GER12_01100) sulA 199231..199740 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  GER12_RS01080 (GER12_01105) ompA 200097..201149 (+) 1053 WP_001670727.1 porin OmpA -
  GER12_RS01085 (GER12_01110) matP 201221..201673 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  GER12_RS01090 (GER12_01115) - 201859..203619 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=394344 GER12_RS01070 WP_001202375.1 198409..199014(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Anatum strain Sal-3973]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=394344 GER12_RS01070 WP_001202375.1 198409..199014(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Anatum strain Sal-3973]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment