Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GCS73_RS10590 Genome accession   NZ_CP045308
Coordinates   2333441..2333770 (-) Length   109 a.a.
NCBI ID   WP_003636695.1    Uniprot ID   D3HJ55
Organism   Legionella longbeachae strain B41211CHC     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2328441..2338770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCS73_RS10565 (GCS73_10490) - 2329086..2329787 (-) 702 WP_003636707.1 hypothetical protein -
  GCS73_RS10570 (GCS73_10495) - 2330185..2330736 (+) 552 WP_003636701.1 pseudouridine synthase -
  GCS73_RS10575 (GCS73_10500) mreD 2330869..2331348 (-) 480 WP_003636699.1 rod shape-determining protein MreD -
  GCS73_RS10580 (GCS73_10505) mreC 2331348..2332253 (-) 906 WP_003636698.1 rod shape-determining protein MreC -
  GCS73_RS10585 (GCS73_10510) - 2332231..2333268 (-) 1038 WP_003636696.1 rod shape-determining protein -
  GCS73_RS10590 (GCS73_10515) comEA 2333441..2333770 (-) 330 WP_003636695.1 ComEA family DNA-binding protein Machinery gene
  GCS73_RS10595 (GCS73_10520) - 2333982..2335391 (-) 1410 WP_012979236.1 M20 family metallopeptidase -
  GCS73_RS10600 (GCS73_10525) - 2335366..2336457 (-) 1092 WP_003636692.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  GCS73_RS10605 (GCS73_10530) nadC 2336454..2337296 (-) 843 WP_003636689.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GCS73_RS10610 (GCS73_10535) - 2337289..2338752 (-) 1464 WP_003636687.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12043.10 Da        Isoelectric Point: 10.1339

>NTDB_id=393359 GCS73_RS10590 WP_003636695.1 2333441..2333770(-) (comEA) [Legionella longbeachae strain B41211CHC]
MKAKFFAAVLSLYVITLPVHATLAKQDAVPKQPPIAIHKIDINNADLTALTGSIKGIGTKRAEAIIAYRQTHHGFKSLEE
LSEVKGIGQHFVNVNREKLSEVFVIHKME

Nucleotide


Download         Length: 330 bp        

>NTDB_id=393359 GCS73_RS10590 WP_003636695.1 2333441..2333770(-) (comEA) [Legionella longbeachae strain B41211CHC]
ATGAAAGCAAAATTTTTTGCTGCTGTGTTATCTTTATATGTTATTACCCTTCCTGTACATGCAACTCTTGCTAAGCAGGA
TGCAGTTCCAAAGCAACCTCCAATAGCAATTCATAAAATAGATATTAACAATGCAGATCTAACCGCACTTACAGGTTCAA
TTAAAGGTATAGGAACAAAACGAGCCGAAGCAATCATTGCTTATCGCCAAACCCATCACGGTTTTAAATCGCTTGAGGAG
CTCTCTGAAGTGAAGGGAATAGGACAGCATTTTGTCAATGTGAATCGTGAAAAGTTAAGTGAAGTATTTGTTATTCATAA
AATGGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HJ55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

58.491

97.248

0.569
  comEA Legionella pneumophila strain ERS1305867

58.491

97.248

0.569

Multiple sequence alignment