Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   GBN68_RS14210 Genome accession   NZ_CP045101
Coordinates   2922078..2922935 (-) Length   285 a.a.
NCBI ID   WP_234954325.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ210     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2917078..2927935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN68_RS14190 (GBN68_14210) - 2917293..2918369 (+) 1077 WP_234954317.1 PhoH family protein -
  GBN68_RS14195 (GBN68_14215) ybeY 2918427..2918906 (+) 480 WP_234954319.1 rRNA maturation RNase YbeY -
  GBN68_RS14200 (GBN68_14220) - 2919008..2919418 (+) 411 WP_234954321.1 hypothetical protein -
  GBN68_RS14205 (GBN68_14225) - 2919596..2921788 (-) 2193 WP_234954323.1 TonB-dependent siderophore receptor -
  GBN68_RS14210 (GBN68_14230) tonB2 2922078..2922935 (-) 858 WP_234954325.1 energy transducer TonB Machinery gene
  GBN68_RS14215 (GBN68_14235) - 2923196..2923873 (+) 678 WP_004977854.1 hypothetical protein -
  GBN68_RS14220 (GBN68_14240) - 2924029..2924739 (+) 711 WP_234951107.1 DUF3108 domain-containing protein -
  GBN68_RS14225 (GBN68_14245) - 2924830..2925405 (+) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  GBN68_RS14230 (GBN68_14250) - 2925681..2926610 (+) 930 WP_234954327.1 sensor domain-containing diguanylate cyclase -
  GBN68_RS14235 (GBN68_14255) - 2926823..2927197 (+) 375 WP_005401257.1 hypothetical protein -
  GBN68_RS14240 (GBN68_14260) wrbA 2927241..2927834 (-) 594 WP_234954329.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32629.11 Da        Isoelectric Point: 6.3661

>NTDB_id=391920 GBN68_RS14210 WP_234954325.1 2922078..2922935(-) (tonB2) [Acinetobacter johnsonii strain AJ210]
MPLAHDWWKDPIFTATVVLAVFLHLVILTLQFAMPQENDAAVKEIAVTLRPSDQKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPETAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=391920 GBN68_RS14210 WP_234954325.1 2922078..2922935(-) (tonB2) [Acinetobacter johnsonii strain AJ210]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACTGTCGTACTGGCGGTATTTTTGCATCTCGTGAT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCCGTTACTTTGCGTCCTTCTGATC
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGGACCTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTAATGACGACTTTGAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGTCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGGATTCAAGCCAAGCAAGATATTTCGGCAGCCTATCTTGA
AAAGTTTCGTCAGAAAGTGGAATTTTATGGCAACCGTTACTATCCAGAAACAGCTAAACAACAACGACTGGCGGGTGAAG
TACGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGCGCCATTCGCCTGATTGATAGTTCAGGCCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCGGTGCGTAAGGCTGCACCATTCGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGATCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.286

98.246

0.73

Multiple sequence alignment