Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HJD23_RS28890 Genome accession   NZ_CP053109
Coordinates   6440804..6442537 (-) Length   577 a.a.
NCBI ID   WP_171112249.1    Uniprot ID   -
Organism   Streptomyces sp. Z423-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6435804..6447537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD23_RS28880 - 6437528..6438838 (+) 1311 WP_171112251.1 RNA polymerase sigma factor -
  HJD23_RS28885 rcrQ 6438876..6440804 (-) 1929 WP_171112250.1 ABC transporter ATP-binding protein Regulator
  HJD23_RS28890 rcrP 6440804..6442537 (-) 1734 WP_171112249.1 ABC transporter ATP-binding protein Regulator
  HJD23_RS28895 - 6442667..6444121 (-) 1455 WP_171112248.1 FGGY family carbohydrate kinase -
  HJD23_RS28900 - 6444185..6444490 (-) 306 WP_171112247.1 YtxH domain-containing protein -
  HJD23_RS28920 - 6445175..6445576 (-) 402 WP_171112246.1 hypothetical protein -
  HJD23_RS28925 - 6445767..6447167 (+) 1401 WP_240980839.1 potassium transporter TrkG -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62503.68 Da        Isoelectric Point: 6.5088

>NTDB_id=390163 HJD23_RS28890 WP_171112249.1 6440804..6442537(-) (rcrP) [Streptomyces sp. Z423-1]
MLIRLLRTYLRPYQRPIALLVLLQFLQTCATLYLPTLNADIIDNGVINGDTGYILSFGALMIGISLAQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREVGHFGAPTLITRTTNDVQQIQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGLSVTLIVRRLRPLFRSMQERLDTVNRVLREQITGNRVIRAFVRDEYEQHRFRKANAELTDVSLGAGNLLAL
MFPIVMTVVNLSSIAVVWFGAHRIAGGGMQIGDLTAYLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQDVLRTSSSVVP
PVAPVRELRRHGHLEIRGAGFRFPGAEEPVLKGIDLLARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
TIDTQVLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKPFVEGLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIVVLDAGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=390163 HJD23_RS28890 WP_171112249.1 6440804..6442537(-) (rcrP) [Streptomyces sp. Z423-1]
GTGCTCATACGACTCCTGCGGACCTACCTCCGGCCCTACCAAAGACCCATCGCTTTACTCGTGCTGCTGCAGTTCCTGCA
GACCTGCGCGACCCTCTACCTGCCCACGTTGAACGCCGACATCATCGACAACGGTGTCATCAACGGTGACACCGGTTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGCATCTCGCTGGCACAGGTGGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGCACCGCCGCCGCGCTCGGCCGGGACGTTCGGGCCGCCGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGGTCGG
CCACTTCGGCGCGCCCACGCTGATCACGCGGACCACGAACGACGTCCAGCAGATCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTTCCGCTGTCCGGGGTA
CTGGTCGCCGTGGTGCCCGTGCTGGGCCTCAGTGTGACCTTGATCGTACGGCGGCTGCGGCCGCTGTTCCGGTCCATGCA
GGAGCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGGGACG
AGTACGAGCAGCACCGCTTCCGGAAGGCGAACGCCGAGCTGACGGACGTGTCCCTGGGCGCCGGAAACCTGCTCGCGCTG
ATGTTCCCCATCGTGATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGGATCGCCGGCGG
CGGGATGCAGATCGGCGATCTCACGGCGTATCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCTGAGGTGTGTGCCGAGCGGATCCAGGACGTGCTGCGGACCTCGTCGAGCGTGGTCCCG
CCGGTCGCTCCCGTCCGGGAGCTGCGCCGGCACGGGCATCTGGAGATCCGCGGGGCCGGGTTCCGCTTCCCGGGTGCCGA
GGAGCCGGTGCTGAAGGGCATCGATCTTCTCGCGCGCCCCGGTGAGACGACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTGGGACTGGTGCCACGGCTGTTCGACGCCACGGACGGGGAAGTGCTGGTCGACGGGGTGGACGTCCGG
ACGATCGACACCCAGGTGCTGGCCAGGACCGTCGGACTGGTGCCGCAGAAGCCGTACCTGTTCGCGGGCACGGTCGCCAC
CAACCTTCGGTACGGCAACCCGGACGCCACCGACGAGGAACTGTGGCACGCGCTTGAGGTGGCGCAGGCCAAGCCCTTCG
TGGAAGGGCTGGAGGGCGGGCTGGACGCGCCGATCGCGCAAGGCGGCACCAACGTCTCCGGCGGCCAGCGGCAGCGGCTC
GCCATCGCGCGGACGCTGGTGCAGCGGCCCGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTGGCCCAGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGCGGGCCGGGTGGTCGGCACCGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.929

97.054

0.378