Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F5J09_RS00050 Genome accession   NZ_CP044361
Coordinates   11339..11935 (+) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain TD 062     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6339..16935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5J09_RS00030 (F5J09_00035) gyrA 6840..9461 (+) 2622 WP_016385862.1 DNA gyrase subunit A -
  F5J09_RS00035 (F5J09_00040) deoC 9566..10270 (-) 705 WP_003600673.1 deoxyribose-phosphate aldolase -
  F5J09_RS00040 (F5J09_00045) ssb 10453..10884 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  F5J09_RS00045 (F5J09_00050) rpsF 11012..11308 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  F5J09_RS00050 (F5J09_00055) ssb 11339..11935 (+) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  F5J09_RS00055 (F5J09_00060) rpsR 12022..12258 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  F5J09_RS00060 (F5J09_00065) - 12699..14177 (+) 1479 WP_159301004.1 cytochrome ubiquinol oxidase subunit I -
  F5J09_RS00065 (F5J09_00070) cydB 14170..15189 (+) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  F5J09_RS00070 (F5J09_00075) - 15216..15410 (+) 195 WP_003600287.1 hypothetical protein -
  F5J09_RS00075 (F5J09_00080) - 15843..16061 (+) 219 WP_159301005.1 Blp family class II bacteriocin -
  F5J09_RS00085 (F5J09_00090) - 16246..16461 (+) 216 WP_016366383.1 Blp family class II bacteriocin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=389710 F5J09_RS00050 WP_003568462.1 11339..11935(+) (ssb) [Lacticaseibacillus paracasei strain TD 062]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=389710 F5J09_RS00050 WP_003568462.1 11339..11935(+) (ssb) [Lacticaseibacillus paracasei strain TD 062]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAGGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485

Multiple sequence alignment