Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | F4V23_RS01530 | Genome accession | NZ_CP044175 |
| Coordinates | 307300..308259 (-) | Length | 319 a.a. |
| NCBI ID | WP_002780619.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain AR-0411 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 302300..313259
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V23_RS01500 | - | 303266..303465 (+) | 200 | Protein_293 | cbb3-type cytochrome oxidase assembly protein | - |
| F4V23_RS01505 | - | 303495..303794 (-) | 300 | WP_002777238.1 | cytochrome c | - |
| F4V23_RS01510 | - | 303871..304434 (+) | 564 | WP_057991446.1 | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | - |
| F4V23_RS01515 | rfaD | 304431..305384 (+) | 954 | WP_002780616.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| F4V23_RS01520 | rfaE1 | 305377..306762 (+) | 1386 | WP_002780617.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| F4V23_RS01525 | gmhA | 306759..307319 (+) | 561 | WP_002780618.1 | D-sedoheptulose 7-phosphate isomerase | - |
| F4V23_RS01530 | waaF | 307300..308259 (-) | 960 | WP_002780619.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| F4V23_RS01535 | - | 308318..309136 (+) | 819 | WP_002780620.1 | glycosyltransferase family 2 protein | - |
| F4V23_RS01540 | - | 309148..310275 (+) | 1128 | WP_002780621.1 | polysaccharide pyruvyl transferase family protein | - |
| F4V23_RS01550 | - | 310762..311106 (+) | 345 | WP_002780624.1 | hypothetical protein | - |
| F4V23_RS10215 | - | 311116..311304 (+) | 189 | WP_032682936.1 | sulfatase-like hydrolase/transferase | - |
| F4V23_RS01560 | - | 311309..312085 (+) | 777 | WP_050456352.1 | sulfatase-like hydrolase/transferase | - |
| F4V23_RS01565 | - | 312182..312454 (+) | 273 | WP_002780626.1 | hypothetical protein | - |
| F4V23_RS10220 | - | 312640..312774 (+) | 135 | WP_002780627.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36674.17 Da Isoelectric Point: 10.2602
>NTDB_id=388541 F4V23_RS01530 WP_002780619.1 307300..308259(-) (waaF) [Campylobacter coli strain AR-0411]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTRQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTRQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=388541 F4V23_RS01530 WP_002780619.1 307300..308259(-) (waaF) [Campylobacter coli strain AR-0411]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAGACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCTTAGGTTTAAACCCTGGAGCA
AGCTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAGACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCTTAGGTTTAAACCCTGGAGCA
AGCTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
93.417 |
100 |
0.934 |