Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   F4V23_RS00450 Genome accession   NZ_CP044175
Coordinates   97873..98388 (+) Length   171 a.a.
NCBI ID   WP_151061217.1    Uniprot ID   -
Organism   Campylobacter coli strain AR-0411     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 92873..103388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V23_RS00425 - 93333..93671 (+) 339 WP_002777761.1 hypothetical protein -
  F4V23_RS00430 - 93680..94405 (+) 726 WP_002812238.1 phosphatidate cytidylyltransferase -
  F4V23_RS00435 dxr 94402..95472 (+) 1071 WP_002783930.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  F4V23_RS00440 - 95474..96868 (+) 1395 WP_151061214.1 M99 family carboxypeptidase catalytic domain-containing protein -
  F4V23_RS00445 tsaD 96865..97872 (+) 1008 WP_072220008.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  F4V23_RS00450 ctsG 97873..98388 (+) 516 WP_151061217.1 type II secretion system protein Machinery gene
  F4V23_RS00455 - 98389..99628 (+) 1240 Protein_88 DUF2920 family protein -
  F4V23_RS00460 - 99640..101469 (+) 1830 WP_151061219.1 motility associated factor glycosyltransferase family protein -
  F4V23_RS00465 - 101466..103295 (+) 1830 WP_151061220.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18762.48 Da        Isoelectric Point: 6.4701

>NTDB_id=388536 F4V23_RS00450 WP_151061217.1 97873..98388(+) (ctsG) [Campylobacter coli strain AR-0411]
MRKAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=388536 F4V23_RS00450 WP_151061217.1 97873..98388(+) (ctsG) [Campylobacter coli strain AR-0411]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGAGGAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.353

99.415

0.918

Multiple sequence alignment