Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   F4V27_RS01665 Genome accession   NZ_CP044167
Coordinates   331691..332659 (+) Length   322 a.a.
NCBI ID   WP_002865440.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0415     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326691..337659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V27_RS01640 cdsA 327600..328325 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  F4V27_RS01645 - 328334..328672 (-) 339 WP_002855905.1 hypothetical protein -
  F4V27_RS01650 - 328674..329981 (-) 1308 WP_057100664.1 NFACT family protein -
  F4V27_RS01655 mobA 330044..330619 (+) 576 WP_052778358.1 molybdenum cofactor guanylyltransferase -
  F4V27_RS01660 pldA 330616..331605 (+) 990 WP_057100663.1 phospholipase A -
  F4V27_RS01665 ceuB 331691..332659 (+) 969 WP_002865440.1 ABC transporter permease Machinery gene
  F4V27_RS01670 ceuC 332652..333590 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  F4V27_RS01675 ceuD 333587..334342 (+) 756 WP_002871403.1 ABC transporter ATP-binding protein -
  F4V27_RS01680 ceuB 334355..335347 (+) 993 WP_057100662.1 enterochelin ABC transporter substrate-binding protein CeuB -
  F4V27_RS01685 - 335502..335723 (+) 222 WP_002853781.1 hypothetical protein -
  F4V27_RS01690 - 335724..336005 (+) 282 WP_002866775.1 type II toxin-antitoxin system RelE/ParE family toxin -
  F4V27_RS01700 - 336366..336920 (-) 555 WP_002936331.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35439.37 Da        Isoelectric Point: 9.6678

>NTDB_id=388464 F4V27_RS01665 WP_002865440.1 331691..332659(+) (ceuB) [Campylobacter jejuni strain AR-0415]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=388464 F4V27_RS01665 WP_002865440.1 331691..332659(+) (ceuB) [Campylobacter jejuni strain AR-0415]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGTAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTGGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGATTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment