Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   F4V27_RS01620 Genome accession   NZ_CP044167
Coordinates   323617..324132 (-) Length   171 a.a.
NCBI ID   WP_057100668.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0415     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 318617..329132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V27_RS01605 - 318724..320541 (-) 1818 WP_150968494.1 motility associated factor glycosyltransferase family protein -
  F4V27_RS01610 - 320538..322361 (-) 1824 WP_150968496.1 motility associated factor glycosyltransferase family protein -
  F4V27_RS01615 - 322371..323617 (-) 1247 Protein_320 DUF2920 family protein -
  F4V27_RS01620 ctsG 323617..324132 (-) 516 WP_057100668.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  F4V27_RS01625 tsaD 324133..325140 (-) 1008 WP_057100667.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  F4V27_RS01630 - 325137..326531 (-) 1395 WP_057100666.1 M99 family carboxypeptidase catalytic domain-containing protein -
  F4V27_RS01635 dxr 326533..327603 (-) 1071 WP_057100665.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  F4V27_RS01640 cdsA 327600..328325 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  F4V27_RS01645 - 328334..328672 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18705.59 Da        Isoelectric Point: 7.1354

>NTDB_id=388463 F4V27_RS01620 WP_057100668.1 323617..324132(-) (ctsG) [Campylobacter jejuni strain AR-0415]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVIGVENVDLSN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENVNFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=388463 F4V27_RS01620 WP_057100668.1 323617..324132(-) (ctsG) [Campylobacter jejuni strain AR-0415]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAATCGGGGTTGAAAATGTTGATCTTAGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTAAACTTTACAAGTTCTTCAAGTAATAAAGCTTGTGTGATCTTAAGCAAGAATGAAAATTTTAAAAATCTA
GCGAGCAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

95.906

100

0.959

Multiple sequence alignment