Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BATR1942_RS03580 Genome accession   NC_014639
Coordinates   739532..739957 (+) Length   141 a.a.
NCBI ID   WP_003327514.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 734532..744957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS03555 (BATR1942_03655) - 734694..736604 (+) 1911 WP_003327519.1 right-handed parallel beta-helix repeat-containing protein -
  BATR1942_RS03560 (BATR1942_03660) - 736616..736903 (+) 288 WP_228370114.1 hypothetical protein -
  BATR1942_RS22000 - 737233..737379 (-) 147 WP_080288976.1 FCD domain-containing protein -
  BATR1942_RS03570 (BATR1942_03675) - 738674..739003 (-) 330 WP_003327517.1 hypothetical protein -
  BATR1942_RS03575 (BATR1942_03680) - 739063..739341 (-) 279 WP_003327515.1 hypothetical protein -
  BATR1942_RS03580 (BATR1942_03685) nucA/comI 739532..739957 (+) 426 WP_003327514.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BATR1942_RS03585 (BATR1942_03690) - 740105..740767 (+) 663 WP_003327513.1 MgtC/SapB family protein -
  BATR1942_RS03590 (BATR1942_03695) - 740826..741065 (-) 240 WP_003327512.1 hypothetical protein -
  BATR1942_RS03595 (BATR1942_03700) - 741278..741490 (-) 213 WP_003327511.1 aspartyl-phosphate phosphatase Spo0E family protein -
  BATR1942_RS20645 - 741550..741765 (-) 216 WP_072053284.1 spore coat protein -
  BATR1942_RS03605 (BATR1942_03710) - 742080..743480 (+) 1401 WP_003327508.1 polysaccharide deacetylase family protein -
  BATR1942_RS03610 (BATR1942_03715) - 743533..744005 (-) 473 Protein_722 YjfA family protein -
  BATR1942_RS03615 (BATR1942_03720) - 744137..744547 (-) 411 WP_003327506.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15363.18 Da        Isoelectric Point: 4.7462

>NTDB_id=38757 BATR1942_RS03580 WP_003327514.1 739532..739957(+) (nucA/comI) [Bacillus atrophaeus 1942]
MKKWITSLFLIAAILFGLMGAEVYASQDVKGASRYDQVLYFPFSRYPETGDHIKDAVAAGHSDVCTIDRAGADERREESL
KGVPTKPGYDRDEWPMAVCEEGGTGADIRYVTPSDNRGAGSSVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=38757 BATR1942_RS03580 WP_003327514.1 739532..739957(+) (nucA/comI) [Bacillus atrophaeus 1942]
ATGAAAAAATGGATCACGAGCTTATTTCTGATCGCAGCGATATTGTTTGGATTGATGGGTGCGGAAGTGTATGCTTCGCA
GGATGTCAAAGGCGCATCACGGTATGATCAGGTTCTTTACTTCCCATTTTCACGTTATCCTGAAACCGGCGATCACATTA
AAGATGCGGTAGCGGCCGGACATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGGTTCCTACGAAACCGGGGTATGACCGGGATGAGTGGCCGATGGCTGTATGCGAAGAAGGCGGGACCGGGGCGGA
TATCCGGTATGTCACCCCATCTGATAATCGAGGCGCCGGTTCATCGGTCGGGAATCAAATGAGCGGTTATTCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.73

89.362

0.525

Multiple sequence alignment