Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   F0362_RS12205 Genome accession   NZ_CP043830
Coordinates   2353907..2354185 (+) Length   92 a.a.
NCBI ID   WP_000842219.1    Uniprot ID   -
Organism   Bacillus sp. BS98     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2348907..2359185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0362_RS12185 (F0362_12185) - 2349678..2350280 (+) 603 WP_097895978.1 hypothetical protein -
  F0362_RS12190 (F0362_12190) - 2350782..2351963 (+) 1182 WP_001169635.1 agmatine/peptidylarginine deiminase -
  F0362_RS12195 (F0362_12195) - 2352389..2352640 (-) 252 WP_000827556.1 response regulator transcription factor -
  F0362_RS12200 (F0362_12200) - 2352888..2353766 (+) 879 WP_000397971.1 helix-turn-helix domain-containing protein -
  F0362_RS12205 (F0362_12205) abrB 2353907..2354185 (+) 279 WP_000842219.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  F0362_RS12210 (F0362_12210) - 2354664..2355914 (+) 1251 WP_001032371.1 hypothetical protein -
  F0362_RS12215 (F0362_12215) - 2355982..2356740 (+) 759 WP_149889782.1 TSUP family transporter -
  F0362_RS12220 (F0362_12220) - 2356993..2357652 (+) 660 WP_000682552.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10296.07 Da        Isoelectric Point: 9.6266

>NTDB_id=386071 F0362_RS12205 WP_000842219.1 2353907..2354185(+) (abrB) [Bacillus sp. BS98]
MKSRGSTRKADSMGRIVIPMEIRRSLGIVEKDALEMFVEDDQIILRKYQSSQACAITGDISDKNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=386071 F0362_RS12205 WP_000842219.1 2353907..2354185(+) (abrB) [Bacillus sp. BS98]
ATGAAATCAAGAGGGAGTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATGCGCTAGAAATGTTTGTGGAAGATGATCAGATTATTTTGCGGAAATATCAATCTTCGCAAGCTT
GTGCAATTACAGGTGATATTTCAGATAAGAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGAACAGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

53.333

97.826

0.522

Multiple sequence alignment